Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00232 ATGCAGTTATTTCAGAAACACACAAAAGCACAATTTTTTATTAATTTCGTATTAGTAGCATCTTCATTTTGTGGCTTTTATGTCATTGCGTCGGTGCTAATGTTAGGTACTTCAAACCCAAAGCTACTAGTACATTTGCAACACTCTTCGTCGGAAGACGTGTCAAAAACCGCAACCGCAAACGCAACCACCAATACAACACTAGATGATATAGTATTTGGAATTGCTGCAAGCAAAAGTTCGTGGACGAAGAGAAAAGAGTATGTGAAACTATGGTGGAAAAGCAACAGTACAATGAAGGGTTGTGTTTTCTTGGATAGTGTACCTAAAAAAGATGAACAGTCTTCTTCTCTTCCTCCACTGTGTCTCTCTCAAGACACGTCGCGTTTTCGATATACTTGCAGCGGGGGACTTCGATCAGCAATACGCGTCGCGCGCGTTGTTGTGGAGACGGTGGCCTTGAATCATACAGGTGTGAAGTGGTATGTGTTTGGAGACGACGACACGGTTTTCTTCCCGGAGAATTTGGTGAAGACTTTATCCAAATATGATGATGAGCTTTGGTATTATATTGGTGCGAACTCGGAGATTTATGAGCAGAATCGTTTGTTCGGGTTTGGAATGGCTTTTGGTGGGGCTGGTTTTGCTATTAGTTCTTCTCTGGCTAAAGTTTTGGCTAAGGTTTTTGATTCTTGTTTGGAAAGGTATCCTCATCTCTATGGAAGTGATGCCAGGGTTCACTCTTGTTTAGCAGAACTTGGGGTTGGATTGACACATGAGCCAGGTTTTCATCAGGTTGATTTAACTGGAAACACCTTTGGCCTATTAGCTGCACATCCCGTAACTCCATTAGTATCTCTACATCACTCAGATTATACAGATCCAATCTTTCCAAAAATGACAAGAACACAAGCTCTCCAACATTTATACAAAGCAGCAAATCTTGATTCTCAAAGAATCCTGCAACAAACAATTTGCTATAACAAAAAGTTTTCTTGGACAATTTCAGTATCATGGGGTTATGCTGTTCAAATATTCAACGACCATATGTTCTTACCAGAAGCTGTCAATGTGCAAGAAACATTCAAACAATGGAAAAATGGAAACATGTTGGCAAAAACTTTTATGTTCAATACAAAGCGATTTGACTCTAATCCTTGTGAAAGACCCACCATTTTTTATCTTGATAGTGTTTCTTCCGGTAAGAATGGTGTCATAACTAGTTATTATAAGAGATTTTTACGAGATTGTCGAAAGGAACGGGGTTCGCCGAACAAACTCGAAGTTATCAAAGTGGTCTCGAATAAGCTAGACCTTAACATCAAACAGTTGCAGGCTCCAAGAAGGCAATGCTGTGATATATTGTCATCTAGTGCTGGTGATAAGTTGGATGTTGCTGTTAGAGAATGCAAAGATGGGGAATTGATTTATATGCACTGA 1440 0.3979 MQLFQKHTKAQFFINFVLVASSFCGFYVIASVLMLGTSNPKLLVHLQHSSSEDVSKTATANATTNTTLDDIVFGIAASKSSWTKRKEYVKLWWKSNSTMKGCVFLDSVPKKDEQSSSLPPLCLSQDTSRFRYTCSGGLRSAIRVARVVVETVALNHTGVKWYVFGDDDTVFFPENLVKTLSKYDDELWYYIGANSEIYEQNRLFGFGMAFGGAGFAISSSLAKVLAKVFDSCLERYPHLYGSDARVHSCLAELGVGLTHEPGFHQVDLTGNTFGLLAAHPVTPLVSLHHSDYTDPIFPKMTRTQALQHLYKAANLDSQRILQQTICYNKKFSWTISVSWGYAVQIFNDHMFLPEAVNVQETFKQWKNGNMLAKTFMFNTKRFDSNPCERPTIFYLDSVSSGKNGVITSYYKRFLRDCRKERGSPNKLEVIKVVSNKLDLNIKQLQAPRRQCCDILSSSAGDKLDVAVRECKDGELIYMH 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00232 479 Gene3D - 58 334 - -
Vifa6g00232 479 Pfam Protein of unknown function, DUF604 200 452 IPR006740 -
Vifa6g00232 479 FunFam Fringe-related protein-like 58 314 - -
Vifa6g00232 479 PANTHER FRINGE-RELATED 18 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00232 Vifa-Chr6 100195689 100198131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00232 52 479 Glycosyltransferase AT4G15240 51.515 2.36e-157 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00232 - - gmx:100784602 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01979 1 317617134 317618716 Vifa6g00232 6 100195689 100198131 PCT