Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00233 ATGATGTTCCACAGAAGAAAAAAAGAACCAAACACATTACCTCTTTCAAATTCACCACAACAACAATCACACACACCAAGTTCACAAATGCCTTCAAATTTTACTTCATATTTTTCTAGATTCAGAATTTCAACACTAACCTCTTTTATATTACTTCTTTCATTACTTCTTAATTTTTATTTCCTTTTAATCCTGTGGGCCCCATACTCCACCGATTTAACACCTTCCGCCGTCGTATCTCGTTTTTCACCAACCACGCGCCGCCATGTTCTCTTCTCCGTCGCTTCGTCTTCTCTCTCATGGCAACACCGTCAGTCTTACGTACACCTCTGGTATTCCGCTAAATCGACAAGAGCACTTGCTTTTCTTGACTCGCCGCCGGGTAATTCGTCTCCGTTGTCTCCACCGGTTGTGATCTCCGGCGACGCGTCTGGATTTCCGTATACTTTACAGGGAGGGCTTCGGTCGGCGATCCGTGTGGCTAGGGTTGTGAAGGAGGCGGTGGATCGGAACGAAACGGATGTTCGGTGGTTTGTGTTTGGGGATGATGATACGGTTTTCTTTGTGGAGAATGTTGTGAAGACGCTTTCGAAGTATGATCATGATAGGTGGTTTTACGTTGGGAGTAATTCGGAGAGTTATGATCAGAACACCATGTATTCGTTTGAGATGGCGTTTGGTGGCGGTGGTTTTGCGATTAGTTATTCTCTTGCCAAGGTTTTGGCTAGGGTTTTGGATTCTTGTTTGAGGAGGTATGGCTTTTTGTATGGGAGTGATGCTAGGATCTATTCATGTGTTGCTGAGCTTGGTGTTACCTTAACTCATGAACCTGGATTTCATCAGTTAGATATGCGAGGGAATTTATTTGGGGTGCTGGCGGCACATCCATTATCTCCTCTCTGTTCCCTTCATCACTTGGATGCTGCCGAGCCTATCTTTCCCGACATGAATAGAACACAAGCTTTGGGACATCTTATTGCAGCTACAAATGTTGATCCCGCGAGAATTCTGCAGCAAACTGTCTGCTACAATCGACCACGTTCTTTGACTTTCTCAATTTCTTGGGGTTTCGCTATCCAAGTTTATCAAGGAAATGTACTTCTACCTGATCTCCTTGCCGTAAAAAAAACATTTGCGCCATGGAGGAAGATTCATTCCAGTTTCATGCTCGACACTAGAGACTATCCTAAAGATCCTTGTAAAAGGCCTTCTATATTCTTCTTGAAAAGTGTTGCATCTGATAAAAGGGGCATTCAGAGCAATTACACTAGACATGTAGAAAAGAAGTGCCCTAAATCAAATCCTAACCTGCCGAATAAGATCACAGTTTATTCAAGAAAGTTGGATCGTAGTATTGAAGAGATGAAAGCTCCCCGTCGTGAGTGCTGCAATAGTATGCCATCTTCAAATGAAACAATCAGTATTCATATTAGACAGTGTGGAAACAATGAACTGATATCAATGGAATCATAG 1473 0.4291 MMFHRRKKEPNTLPLSNSPQQQSHTPSSQMPSNFTSYFSRFRISTLTSFILLLSLLLNFYFLLILWAPYSTDLTPSAVVSRFSPTTRRHVLFSVASSSLSWQHRQSYVHLWYSAKSTRALAFLDSPPGNSSPLSPPVVISGDASGFPYTLQGGLRSAIRVARVVKEAVDRNETDVRWFVFGDDDTVFFVENVVKTLSKYDHDRWFYVGSNSESYDQNTMYSFEMAFGGGGFAISYSLAKVLARVLDSCLRRYGFLYGSDARIYSCVAELGVTLTHEPGFHQLDMRGNLFGVLAAHPLSPLCSLHHLDAAEPIFPDMNRTQALGHLIAATNVDPARILQQTVCYNRPRSLTFSISWGFAIQVYQGNVLLPDLLAVKKTFAPWRKIHSSFMLDTRDYPKDPCKRPSIFFLKSVASDKRGIQSNYTRHVEKKCPKSNPNLPNKITVYSRKLDRSIEEMKAPRRECCNSMPSSNETISIHIRQCGNNELISMES 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00233 490 MobiDBLite consensus disorder prediction 1 31 - -
Vifa6g00233 490 Gene3D - 79 306 - -
Vifa6g00233 490 PANTHER FRINGE-RELATED 45 486 - -
Vifa6g00233 490 FunFam Fringe-related protein 79 318 - -
Vifa6g00233 490 MobiDBLite consensus disorder prediction 12 31 - -
Vifa6g00233 490 Pfam Protein of unknown function, DUF604 216 463 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00233 Vifa-Chr6 100664861 100668496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00233 85 490 Glycosyltransferase AT4G15240 61.314 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00233 - - gmx:100813277 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00233 6 100664861 100668496 Vifa6g00233 6 100664861 100668496 ECH
Vifa6g00233 6 100664861 100668496 Vifa1g01979 1 317617134 317618716 PCT