Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01150 ATGAGTCTGATTCGATGGTCTTTTATCCTATGGATTACCATGATTCTTTTTATCCATAATTGGGATAATGTGGAAGGAAGGTACCACTATCACAAAGGGCAGAAGAAAAGTCCCCCTACACCAGAGGAACCTCCTTCACCTTCACCTCCTTCCATTTCCCCTGCTGTTCCCTCTGATCCTTATCCCAGTGATCCTGGGGATTCCCCTTCAAACTGCATTTTCGATGTAAGATCCTTTGGGGCAGTTGGAGACGGTTCAGCTGATGACACACAGTCATTCGTGGCAGCATGGAAAGCAGCCTGTGCAGTAGAGTCAGGGGTTGTTCTTGTTCCAGAAAATTACTGTTTCAAGATAACTTCAACTATCTTTACAGGTCCATGCAAGCCTGGACTGGTGGATGGTACCCTCATGGCACCTGATGGACCAGAATCTTGGCCTAAGGAAGATAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGCAATGGGGAGCAGTGGTGGGATCTTCCTTGCAAACCTCACCGGGGTCCCGATGGAAAAACTGTATCAGGACCATGTGATAGCCCTACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGCTGAGTGGGGTAAAGATTCAAAACAGTCCTATGTTCCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATAGACAAGCTGTCAATTTCTTCTCCTAAACTCAGTCCAAATACTGACGGAATCCACTTAGGAAACACAAAGGGTGTTGGGATATATAACTCCATGATAAGCAATGGTGACGATTGCATCTCGATTGGACCCGGGTGCTCAGACGTGGACATAGAGGGTGTCACTTGTGCTCCCACCCATGGTATTAGCATTGGAAGCCTGGGAGTGCACAATTCGCAGGCATGTGTCTCAAACTTGACTGTTCGCAACACCGTCATAAAGGAATCAGACAATGGCCTGAGGATCAAGACATGGCAAGGTGGAACGGGGTCAGTGAGTGGCCTAAGATTTGAAAACATCCAAATGGAGAATGTGAGAAACTGCATCATCATTGACCAGTACTACTGCTTGTCGAAGGAGTGTCTGAACCAAACTTCAGCAGTGCATGTAAACAATGTGATATACAGGAACATAAAGGGTACTTATGATGTGAGAACTCCGCCTATACACTTTGCTTGCAGTGACAGTGTGGCATGCACCAACATAACACTCTCTGAGATAGAGCTTTTGCCATACGAAGGGGTATTACTAGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTGATTGCTTAAGAGAAGGTGAACCTGATACAGTCGTGGAGCTCTCTGCCTACGAATGTAGATTCGTCCCTATTTGGGGTTTCCCCTTACTCTATACCATGCCGTCCCTTCAAACTGCTCTGCCTCCTGAGCTCGCCAACAATACTCTTAGGCTCTACCGTGAATGCCTGCGCAGAGCTAAATATATTGGTCATCGGAAACATAACACACAGCTTCTTGTTGATATGGTGAGACAACAGTTTAAGAAACACAAGCATGAGACAGATCCTGAGAAGATTCAGAAGTTGAAGGATGATGCTGCAAGGGGGCTTATCAATCACATATTGTATGAGTCAGAGCAAGTGACAGGTTCTAAATTTAGCAAGACTAAGCAGCCTAACTAA 1719 0.4561 MSLIRWSFILWITMILFIHNWDNVEGRYHYHKGQKKSPPTPEEPPSPSPPSISPAVPSDPYPSDPGDSPSNCIFDVRSFGAVGDGSADDTQSFVAAWKAACAVESGVVLVPENYCFKITSTIFTGPCKPGLVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTVIKESDNGLRIKTWQGGTGSVSGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNNVIYRNIKGTYDVRTPPIHFACSDSVACTNITLSEIELLPYEGVLLDDPFCWNAYGTQETMTIPPLDCLREGEPDTVVELSAYECRFVPIWGFPLLYTMPSLQTALPPELANNTLRLYRECLRRAKYIGHRKHNTQLLVDMVRQQFKKHKHETDPEKIQKLKDDAARGLINHILYESEQVTGSKFSKTKQPN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01150 572 Pfam Complex 1 protein (LYR family) 494 545 IPR008011 -
Vian6g01150 572 FunFam Polygalacturonase At1g48100 family 62 452 - -
Vian6g01150 572 Gene3D - 66 459 IPR012334 -
Vian6g01150 572 CDD Complex1_LYR_SF 494 551 - -
Vian6g01150 572 MobiDBLite consensus disorder prediction 39 64 - -
Vian6g01150 572 PANTHER - 72 437 - -
Vian6g01150 572 MobiDBLite consensus disorder prediction 30 67 - -
Vian6g01150 572 Pfam Glycosyl hydrolases family 28 109 418 IPR000743 GO:0004650|GO:0005975
Vian6g01150 572 SUPERFAMILY Pectin lyase-like 71 483 IPR011050 -
Vian6g01150 572 SMART pbh1 282 302 IPR006626 -
Vian6g01150 572 SMART pbh1 259 280 IPR006626 -
Vian6g01150 572 SMART pbh1 232 258 IPR006626 -
Vian6g01150 572 SMART pbh1 312 333 IPR006626 -
Vian6g01150 572 SMART pbh1 341 362 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01150 Vian-Chr6 29094054 29099499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01150 9 467 Glycoside Hydrolase AT1G48100 70.878 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01150 - - gmx:100785528 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01150 6 29094054 29099499 Vian6g01150 6 29094054 29099499 ECH
Vian6g01150 6 29094054 29099499 Vian2g02798 2 48891247 48893432 ECH
Vian6g01150 6 29094054 29099499 Vian3g01561 3 17030919 17033365 ECH