Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01561 ATGGGAGGTTTGTCTAGTACCCAGCCTGCTTCTAGTTATTCCTTTTTGCTCTTTTCAGAATTGTCATATGCAGACTCCACAATCTCTAAGAGGAGGCCAATGCCTATGTACCATTACCATAAAAAACACAAACACTCGAATTATCATAATGCACCTGAAATTTCACCATCTCCTTCTCCATTCTCTGGACCTTCTAGCCCCCCTGATGAAGCTCCTTGTCCTAGCCCCTCTGTTGATGACAACTACCGGAATACATCTAATAACCTGTTTGATGTTCGAGCATTTGGGGCCATTGGAGATGGAGTAACTGATGCTACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCGGCTGTTAAAGTTATCCTCGTTCCCCAAGGTCTCTCCTTCGTCATTCAATCTGCTATCTTTACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTCATGCCACCAGATGGACCTGACTCTTGGCCAAAGAACACCAGTAAGCGTCAATGGCTTGTCTTTTATAGAATCAATGGTTTTTCACTTGAAGGAAGCGGTTTAATAGATGGTAGAGGAGAAAAATGGTGGGACCTCCCTTGTAAGCCTCATAAGGGACCCCATGGGACAACATCTCCAGGACCTTGCGACAGCCCTGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGAGTGTACAAGGACTTAAAATCAAGAACAGCCCCCAGTTCCACTTCAGATTCGATGGCTGCGAAAGCGTCCACGTGGAATCAATATACATAACAGCTCCAGCACTCAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAAAATATACAATTCGGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATGACATGTGGACCTGGTCATGGTATAAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGTCAGATAACGGGGTTAGGATCAAGACGTGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTTAATAATATTCATATGGAAAGTGTAAGAAACCCCATCATAATTGATCAGTTTTACTGCCTGAGTAAGGATTGCTCCAACAAGACCTCTGCAGTGTTTGTATCGAATATATCTTACACAAACATAAAGGGAACATATGATATAAGGCACCCTCCTATGCATTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTGACCCTCTCAGATGTTGAGCTTCTTCCAGCTGAAGGAGACATTGTGCTTGATCCTTACTGCTGGAGTGCCTATGGAATCTCTGAGACACTAACCATTCCCCCAGTCTCTTGCTTGCTTGAAGGCCTTCCCCAGTCCATTTCAGGAAATGACGTAGATCATTGCTGA 1461 0.4442 MGGLSSTQPASSYSFLLFSELSYADSTISKRRPMPMYHYHKKHKHSNYHNAPEISPSPSPFSGPSSPPDEAPCPSPSVDDNYRNTSNNLFDVRAFGAIGDGVTDATESFKMAWDTACQSESAVKVILVPQGLSFVIQSAIFTGPCKGGLVLKVDGTLMPPDGPDSWPKNTSKRQWLVFYRINGFSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLSVQGLKIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFNNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVSNISYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDVELLPAEGDIVLDPYCWSAYGISETLTIPPVSCLLEGLPQSISGNDVDHC 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01561 486 Pfam Glycosyl hydrolases family 28 121 439 IPR000743 GO:0004650|GO:0005975
Vian3g01561 486 SUPERFAMILY Pectin lyase-like 87 474 IPR011050 -
Vian3g01561 486 MobiDBLite consensus disorder prediction 47 82 - -
Vian3g01561 486 PANTHER - 88 457 - -
Vian3g01561 486 FunFam Polygalacturonase At1g48100 family 78 473 - -
Vian3g01561 486 SMART pbh1 333 354 IPR006626 -
Vian3g01561 486 SMART pbh1 280 301 IPR006626 -
Vian3g01561 486 SMART pbh1 362 383 IPR006626 -
Vian3g01561 486 SMART pbh1 253 279 IPR006626 -
Vian3g01561 486 SMART pbh1 303 323 IPR006626 -
Vian3g01561 486 Gene3D - 77 471 IPR012334 -
Vian3g01561 486 ProSitePatterns Polygalacturonase active site. 310 323 IPR000743 GO:0004650|GO:0005975
Vian3g01561 486 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01561 Vian-Chr3 17030919 17033365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01561 79 486 Glycoside Hydrolase AT1G02460 72.019 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01561 - - gmx:100792285 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01561 3 17030919 17033365 Vian3g01561 3 17030919 17033365 ECH
Vian2g02798 2 48891247 48893432 Vian3g01561 3 17030919 17033365 ECH
Vian6g01150 6 29094054 29099499 Vian3g01561 3 17030919 17033365 ECH
Vian2g02798 2 48891247 48893432 Vian3g01561 3 17030919 17033365 PCT