Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02798 ATGTTCAGAATGAAGCATTCTCCTATTTCACCACTAGCATTCTCTTCATTTTTCCTTACTTTATTTCTTCTGGTCCAAGCCAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAATCTTCTAAACATTCAAATCCTGCACCTCCTACCCCTCCTCCTAATGAGAACAATAGCAATTCTTCTGTGGTTTTGGATGTACGAACATTTGGAGCAATAGGAGATGGAAAAACAGATGATACAGAGTCATTTAAGATGGCATGGGACACTGCTTGCCAGAGTGAATCAGCAGTTAATGCTATTCTTGTACCTCAAGGTTTCTCTTTCCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAAGTTTCATGGTGTTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCCGAATATTGGCCAAAGAACAACAGTAGGCACCAATGGTTGGTGTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCATGTAAGCCTCACAAGGGACCTAATGGGACAACACTCCCTGGACCCTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCATGGACTAAGGATAAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCACATAGAATCAATCTACATAACAGCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACAAATGAAGTGAAAATATACAATTCTGTTATTTCTAATGAAAAAGTTTTATTCTCCTCATCTGTTGGCATTGGTAGTCTGGGGAATCACAACTCTCGAGCCTGTGTTTCAAACATTGTGGTGAGAGATTCACTCATAAAAATGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTGTCTGGAGTGACATTCAACAATATTCATATGGTTAGTGTAAGAAATCCAATCATAATTGACCAATTCTACTGCCTCACCAAGGATTGCACCAACAAGACCTCTGCAGTATCTGTATCAAATATTATTTACACAAACATAAGGGGTACTTATGATATAAGGAGCCCCCCAATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATTGAGCTTCTTCCAGCTGAAGGAGACATAGTGCATGACCCTTTCTGCTGGAATGCATATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCATGCTTGCTCGAGGGCACTCCTCAATCCGTGTCAGACTTTGACATAACTCGTTGCTGA 1338 0.4141 MFRMKHSPISPLAFSSFFLTLFLLVQARHHSHTKHKHSHSHKSSKHSNPAPPTPPPNENNSNSSVVLDVRTFGAIGDGKTDDTESFKMAWDTACQSESAVNAILVPQGFSFLIQSTIFTGPCQSFMVLKVDGTLMPPDGPEYWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPNGTTLPGPCDSPIAIRFFMSSNLTVHGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNEVKIYNSVISNEKVLFSSSVGIGSLGNHNSRACVSNIVVRDSLIKMTDNGVRIKTWQGGSGSVSGVTFNNIHMVSVRNPIIIDQFYCLTKDCTNKTSAVSVSNIIYTNIRGTYDIRSPPMRFACSDSVPCTNLTLSEIELLPAEGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVSDFDITRC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02798 445 PANTHER - 65 416 - -
Vian2g02798 445 MobiDBLite consensus disorder prediction 33 63 - -
Vian2g02798 445 FunFam Polygalacturonase At1g48100 family 55 432 - -
Vian2g02798 445 Pfam Glycosyl hydrolases family 28 97 269 IPR000743 GO:0004650|GO:0005975
Vian2g02798 445 Pfam Glycosyl hydrolases family 28 279 398 IPR000743 GO:0004650|GO:0005975
Vian2g02798 445 Gene3D - 53 435 IPR012334 -
Vian2g02798 445 SUPERFAMILY Pectin lyase-like 65 436 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02798 Vian-Chr2 48891247 48893432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02798 66 445 Glycoside Hydrolase AT1G02460 66.334 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02798 - - gmx:100778836 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02798 2 48891247 48893432 Vian2g02798 2 48891247 48893432 ECH
Vian2g02798 2 48891247 48893432 Vian3g01561 3 17030919 17033365 ECH
Vian6g01150 6 29094054 29099499 Vian2g02798 2 48891247 48893432 ECH
Vian2g02798 2 48891247 48893432 Vian3g01561 3 17030919 17033365 PCT