Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02138 ATGGGGTTTGCTTGTTTTTGTGTTGGTTTTCAGATGGAAGCGTTTCAAGGGACGACGAGGGGTGACATTTCATCCCAAGTGGGTCTGGTTTGGAGCCAAGTGAAGGAGCCAGTGATGGTGCCACTGCTGAGAGTGGCAGTGTTTCTGTGCTTGGCCATGTCGTTGATGATGTTGATGGAGAGAGTGTACATGGGCCTTGTCATTTGCTTGGTGAAGCTGTTCGGTAGAAGACCTGAGAAGCGTTACAAATGGGAGCCTCTGAAAGAGGACGTTGAGCTGGGAAACTCTATCTATCCCATGGTTCTGGTTCAAGTCCCAATGTACAACGAAAGAGAGGTTTATCAGCTCTCGATCGGTGCCGCTTGTGGGCTTTCTTGGCCTTCGGACAGGATCATCATACAAATTCTTGATGATTCTACTGACCCATCAATCAAGGAAATGGTGCAAATGGAATGTAGCAGATGGGCAAGCAAAGGAGTGAACATAAAGTACGAAGTGAGGGACAACAGAAATGGGTACAAAGCAGGGGCTCTGAAAGAAGGGATGAAACGTAGCTACGTGAAGCAATGTGACTATGTTGCCATTTTTGACGCAGATTTTCAACCAGAACCTGATTTCCTATGGCGAACTGTCCCATTCCTCGTCAACAACCCTGAACTTGGTCTTGTTCAGGCACGCTGGAAGTTTGTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCATTGGATTACCATTTTACTGTTGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGCTTCAATGGAACTGCGGGTGTGTGGAGAATTTCGGCGCTGAATGAGGCTGGGGGATGGAAGGATAGAACCACAGTGGAAGACATGGACCTGGCTGTTCGAGCCAGTCTCAAAGGATGGAAATTCTTATACCTGGCCAATTTGAAGGTGAAAAATGAACTACCAAGTACTCTGAAGGCCTACCGGTACCAACAGCACAGGTGGTCTTGCGGACCAGCCAATCTTTTCCGGAAAATGGTGATGGAGATAATGAGGAACAAGAAAGTATCCTTGTGGAAGAAGATATATGTGGTTTACAGTTTCTTCTTCGTCCGGAAGGTCGTGGCCCACATAAACACTTTCGTGTTCTATTGCATTGTCTTACCTGCAACAGTTGTGGTGCCTGAGGTGGTGGTACCCAAGTGGGGTGCTGTTTATATCCCTTCCATCATCACACTCCTAAATGCTGTTGGAACTCCAAGGTCACTCCACTTACTGGTCTTTTGGATTCTCTTTGAGAATACCATGTCTCTGCATCGAACAAAGGCTACAATTATTGGTCTACTAGAGGCTAGTCGAGTGAATGAATGGATTGTCACTGAAAAACTTGGAGATGCACTTAAGGGTAAAGGTGGGGGTAAAGCACCCAAGAAGATTCGATTCAGGATTGGAGACAGAATTCACATGTTGGAACTTCTTGTTGGATTCTACCTTTTCTTCTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCGGTTCTATATATTTCTATACATTCAATCAATTGCTTTCTTCATCATGGCATTTGGATATGTTGGCACTATCGTTCCCAACTCCTAA 1608 0.4552 MGFACFCVGFQMEAFQGTTRGDISSQVGLVWSQVKEPVMVPLLRVAVFLCLAMSLMMLMERVYMGLVICLVKLFGRRPEKRYKWEPLKEDVELGNSIYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPSIKEMVQMECSRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDYVAIFDADFQPEPDFLWRTVPFLVNNPELGLVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLANLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVMEIMRNKKVSLWKKIYVVYSFFFVRKVVAHINTFVFYCIVLPATVVVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLEASRVNEWIVTEKLGDALKGKGGGKAPKKIRFRIGDRIHMLELLVGFYLFFCGCYDVMFGKNRFYIFLYIQSIAFFIMAFGYVGTIVPNS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02138 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 375 IPR029044 -
Vian3g02138 535 FunFam Glucomannan 4-beta-mannosyltransferase 9 90 318 - -
Vian3g02138 535 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 24 530 - -
Vian3g02138 535 Pfam Glycosyl transferase family group 2 192 391 IPR001173 -
Vian3g02138 535 CDD CESA_CaSu_A2 99 335 - -
Vian3g02138 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 314 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02138 Vian-Chr3 30594085 30599853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02138 13 534 Miscellaneous Gene Families AT5G03760 78.585 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02138 K13680 - gmx:100782772 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02138 3 30594085 30599853 Vian5g01083 5 32698385 32703757 ECH
Vian3g02138 3 30594085 30599853 Vian3g02138 3 30594085 30599853 ECH
Vian2g02443 2 44950039 44954103 Vian3g02138 3 30594085 30599853 PCT