Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02443 ATGGATCGTTTTTCTTCCAGTACCGTTATCCCTGAGGCGTTCCAAGGGGCCAAAGATGACCTCACCACACAGCTTGCATTGGTTTGGAATCAAATCAAAGCGCCATTGATTGTCCCGTTGCTGAGACTGGCCGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCATTGAGAGGGTCTACATGGGCGTTGTCATAACTCTGGTGAAGTTGTTCGGGAGAAAGCCCGATAAACGTTACAAATGGGAGCCAATGAAGGACGACATAGAGTTGGGAAACTCTTCTTACCCAATGGTTCTCGTTCAAGTCCCCATGTACAACGAAAGAGAGGTTTATCAGCTCTCTATTGGAGCTGCTTGTGGGCTTTCTTGGCCTTCAGATAGGATCATCATACAAATCCTTGATGACTCCACTGACCCAACAATCAAGGAGATGGTGCAGCTTGAATGTCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGAGACAACAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGCAGCTACGTGAAACAATGTGATTGTGTTGCAATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCTTGTGGCGAACCATCCCATTCTTAGTGCACAATCCCGAACTAGCTCTCATTCAAGCTCGGTGGAAATTTGTTGCATTTTCCGTGGCTTTGATTTCTTTTGAGTTTTGTCCCGTGTTGTGGAAAAAGGTGGGAATGGCAGATTGGGTTTGGTTGTGTCATTGTGTGGCCGAAAAGTCTGATATAACGATGGACCACTGCTTAATGCGGAAAAGGATAGGAGGGCAATACTTGAAAGCTGCAGTGCATGTATTGAATTCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCATTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGATTCAACGGGACTGCGGGAGTGTGGAGAATATCTGCATTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGATTTGAAGGTTAAAAATGAATTGCCAAGCACTCTCAAGGCCTACCGTTACCAGCAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGAAAAATGGTCTTGGAGATCATAAACAACAAGAAAGTGTCATCGTGGAAGAAAATACACGTGATATACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACCTTTGTGTTCTACTGCATTGTATTGCCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTTTATATCCCTTCTGTCATCACTATTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTGCTGGTGTTCTGGATTCTCTTTGAGAATGTCATGTCGCTTCACCGAACCAAGGCAACGATTATTGGTCTACTAGAGGCTAGTCGAGTGAACGAATGGGTTGTCACAGAAAAACTTGGTGATGCTTTGAAGGCTAAAGCAGGAGGCAAAGCACCTAAAAAGCCTCGATTCAAGATTGGAGACAGGATTCATTTATTAGAACTTGGGGTCGCATTCTACCTCTTCTTTTGTGGGTGCTATGATGTTATGTTCGGGAAAAACCACTTCTTCATCTTTCTCTTTATCCAATCTCTTGCCTTCTTCATTATGGCATTTGGATATGTTGGCACCATTGTTCCTCAGTCCTAG 1782 0.4473 MDRFSSSTVIPEAFQGAKDDLTTQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMFIERVYMGVVITLVKLFGRKPDKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKEMVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTIPFLVHNPELALIQARWKFVAFSVALISFEFCPVLWKKVGMADWVWLCHCVAEKSDITMDHCLMRKRIGGQYLKAAVHVLNSDECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVLEIINNKKVSSWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKAPKKPRFKIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSLAFFIMAFGYVGTIVPQS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02443 593 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 12 588 - -
Vian2g02443 593 Pfam Glycosyl transferase family 2 102 223 IPR001173 -
Vian2g02443 593 Pfam Glycosyl transferase family group 2 301 448 IPR001173 -
Vian2g02443 593 CDD CESA_CaSu_A2 97 393 - -
Vian2g02443 593 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 433 IPR029044 -
Vian2g02443 593 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 241 IPR029044 -
Vian2g02443 593 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 273 373 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02443 Vian-Chr2 44950039 44954103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02443 1 592 Miscellaneous Gene Families AT5G03760 69.140 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02443 K13680 - gmx:100782772 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02443 2 44950039 44954103 Vian5g01083 5 32698385 32703757 ECH
Vian2g02443 2 44950039 44954103 Vian2g02443 2 44950039 44954103 ECH
Vian2g02443 2 44950039 44954103 Vian3g02138 3 30594085 30599853 PCT