Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01468 ATGGCCCCTGTCATGACCACCGTGGAAGCCAATCTCACCAAAGCAGAAGCTAAATCCGCCGAAGGTGTTGACCGTGCCTACGTGACCTTCCTTGCTGGAAACGGTGACTATGTAAAAGGTGTGGTTGGGTTGGCGAAAGGTCTGAGGAAGGTGAAGAGCATGTACCCTCTGGTGGTAGCAATGCTACCGGATGTTCCCGAAGAGCATCGCAACATTCTCATCAACCAAGGCTGCATTGTTAGAGAGATTGAGCCCGTGTACCCTCCAGAAAACCAAACCCAGTTTGCCATGGCATATTATGTCATCAACTACTCCAAGCTAAGAATTTGGGAGTTTGTGGAATACTCTAAGATGATTTACCTAGATGGTGATATCCAAGTGTTTGACAACATCGACCACTTGTTCGACTTGCCTGACAACTACTTGTATGCGGTGAAGGACTGTTTCTGTGAAGCCACCTGGGCCCACACTCCACAGTATGGGATCGGGTACTGCCAGCAGTGCCCCGACAAGGTTCAGTGGCCCGCCAACCTTGGGCCCAAGCCTCCTCTCTATTTCAACGCTGGGATGTTTGTTTACCAGCCCAATCTGGCTACCTACAAGGACCTTCTTCAAACAGTTCAAGTCACCAAGCCCACTTCCTTTGCTGAACAAGATTTTCTGAACATGTACTTCAAGGGTAAGTATAAGCCAATTTCCAATATGTACAATCTTGTGCTGGCCATGTTATGGCGTCACCCTGAGAATGTTGAGCTTGAAAAAGTTAAAGTGGTTCACTACTGTGCTGCGGGATCAAAGCCTTGGAGGTACAGTGAAAAAGAGGAGAATATGCAGAGAGAAGATATAAAGATGTTAGTGAAGAAGTGGTGGGATATATATGAGGATGAGACTTTGGATTATAACTATTCACTCAATGCAGAAAGGTTCACTGAGACGCTTTTAGAGGGTGGCGAACTCAATTACGTTCCTGCTCCATCTGCTGCTTAA 987 0.4691 MAPVMTTVEANLTKAEAKSAEGVDRAYVTFLAGNGDYVKGVVGLAKGLRKVKSMYPLVVAMLPDVPEEHRNILINQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDNYLYAVKDCFCEATWAHTPQYGIGYCQQCPDKVQWPANLGPKPPLYFNAGMFVYQPNLATYKDLLQTVQVTKPTSFAEQDFLNMYFKGKYKPISNMYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYSEKEENMQREDIKMLVKKWWDIYEDETLDYNYSLNAERFTETLLEGGELNYVPAPSAA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01468 328 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 297 IPR029044 -
Vian3g01468 328 PANTHER GLYCOGENIN SUBFAMILY MEMBER 12 297 - -
Vian3g01468 328 FunFam Hexosyltransferase 23 301 - -
Vian3g01468 328 CDD GT8_Glycogenin 25 295 - -
Vian3g01468 328 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 23 299 IPR029044 -
Vian3g01468 328 Pfam Glycosyl transferase family 8 29 270 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01468 Vian-Chr3 16064350 16065601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01468 1 328 Glycosyltransferase AT1G56600 72.781 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01468 K18819 - gmx:548050 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01468 3 16064350 16065601 Vian3g01468 3 16064350 16065601 ECH
Vian2g02804 2 48955388 48956608 Vian3g01468 3 16064350 16065601 ECH
Vian2g02725 2 48170225 48172526 Vian3g01468 3 16064350 16065601 PCT