Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01399 ATGTCCCACACACCACCGCAAGCCCTCGATTCCGAGGAGCCAACCCCCGCATCCGCCGCCACTGCCGCCCAAACCCCCGATTCCCATGACGCCACGCTCCTCCACCTTTCTTTCAACCAAGATTCCGGATGCTTCGCCGCGGCCACTGACCGCGGCTTCCGCATCTACAACTGCGACCCTTTCCGGGAGATCTTCCGCCGCGATTTCGGCCCCGGCGGTGGTGTTGGCCTCGTCCACATGCTCTTCCGCTGCAACATACTCGCCTTCGTCGGTGGCGGCGCCGACCCACGCTACCCCCCCAACAAGGTTATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTATCCTTCCGCTCTGAGGTGAAGGGCGTCCGGCTCCGGCGCGACCGCATCGTGGTGGTCCTGGCGCACAAGATCTTTGTGTACAACTTCTCCGATCTCAAGGTGCTGCACCAAATTGAGACCATCGCCAACCCTAAGGGCCTCTGCGACCTCTCCCACGTTTCGGCCACCATGGTCCTAGTCTGCCCCGGGTTGCAGAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCCAAGAGAACCAAGTTCATCATGGCGCACGATTCCCGAATTGCTTGTTTTTCTCTCACGCATGATGGCAGGTTGCTCGCCACCGCCAGCTCCAAGGGCACCCTCATTAGGCTCTTCAATACCCTCGACGGTTCATTGCTCCAAGAGGTAAGGAGGGGTGCAGACCGAGCAGAGATATACAGCCTTGCATTCTCTCCTACTGCGCAGTGGCTTGCTGTTTCCAGTGACAAGGGGACCGTTCATGTTTTCAACTTGAAGGTTGATTCTGGACTGATGGGGCATGACAGATCGAACAGTACTTCTGAGGCTAATCCTGCTAACCCTACTGCTGTTTCATCTCTTTCATTTATTAAAGGTGTGCTACCTAAGTATTTTAGCTCGGAGTGGTCCGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAGTATATTGTGGCATTTGGCCATCAAAAGAATACAATTGTAATACTAGGCATGGATGGCAGGTTTTGTGCTTATGGTACTTCTACCGATGTCAGTTTGACTCCTCGAGCGGTGGAGAGATGA 1119 0.5567 MSHTPPQALDSEEPTPASAATAAQTPDSHDATLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGADPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFSDLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFSLTHDGRLLATASSKGTLIRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLMGHDRSNSTSEANPANPTAVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGRFCAYGTSTDVSLTPRAVER 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01399 372 MobiDBLite consensus disorder prediction 1 26 - -
Vian3g01399 372 FunFam Autophagy-related protein 18a isoform A 31 360 - -
Vian3g01399 372 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 27 358 - -
Vian3g01399 372 Gene3D - 10 358 IPR015943 GO:0005515
Vian3g01399 372 Pfam WD domain, G-beta repeat 245 276 IPR001680 GO:0005515
Vian3g01399 372 SUPERFAMILY WD40 repeat-like 26 278 IPR036322 GO:0005515
Vian3g01399 372 SMART WD40_4 235 276 IPR001680 GO:0005515
Vian3g01399 372 SMART WD40_4 19 57 IPR001680 GO:0005515
Vian3g01399 372 SMART WD40_4 192 232 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01399 Vian-Chr3 15380654 15383248 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01399 K22991 - gmx:100787427 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01399 3 15380654 15383248 Vian3g01399 3 15380654 15383248 ECH
Vian2g02901 2 49756343 49759656 Vian3g01399 3 15380654 15383248 ECH
Vian2g02091 2 40653659 40654780 Vian3g01399 3 15380654 15383248 PCT