Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02901 ATGGCTACGCTTTCAGCATGCGCTTCACCTCCATGGCCAAATCCTGATCAAACCACCTCTCCCAGTTCAAATCCAAACCCTAATTTCCTTCCCGAACAGTCCCAAACACTCGACTTCGAATCCCTCGTGCCTCCGCAACCGAAATCGCCAAAGCGCTACCGCTCCCCCGCCGCATCGCCGCCGGGATTCTCCTCGGCGGCGCCCCCAACGGTGCTCCACCTCGCCTTCAACCAGGACCAGGCTTGCTTCTCTGCCGCCACTGACAACGGTTTCCGCATCTACAATTGCAACCCCTTCAGCGAGCAATTCCGCCGCGAGTTTGACGGCGGCGGAATCGGTCACGTCGCGATGCTCTTCCGCTGCAACATAATCGCCCTCGTCGGCGGCGGACCCAATCCCCATTACCCGCCCAACAAGGTCATGATCTGGGACGACCATGAGGGCTGCTGCATCGGTGATTTATCCCCCCGTGCCGCGGTTCGCAGCGTCCGGCTCCGCCGCGATCGGATTATCGTCGCTGTCGAGCAGAGGATTTTGGTCTACAACTTCCAGGACCTCAATCTCTTGCACCAGATTGAGACCTATCCCAACCCTAAGGGTCTCTGCGCGGTTTCGCAACTGTCTGATTCGTTCGTTCTCGCATGCCTTGGATTGCAGAAGGGTCAGATTCGCGTTGAGCACTATTCGCAAAAGAAGACAAAGTTCATATCTGCGCATGACTCCAGAATTACTTGTTTCGCTCTCACACTTGATGGGCAGTTAATTGCCACCGCCAGCTCAAAGGGCACGCTGATTCGAATTTTCGACACGGTTCAGGGCACACTTCTTCAGGAAGTGAGAAGGGGTGCAAATGTTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCACGGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTTAAGGTTAATTCTAGCATCTCCGAGGAAGAAAAACCTCAAAATCCATCCAATTCAGATACTGCCATTACCCCTTCTAACTCATCTCGCTCCTTCATCAAATTTAAAGGAGTGTTACCCAAGTATTTCAATTCTGAGTGGTCGGTTGCTCAGTTTCGCTTACAAGAGGGCTCTCACTACATAGTTGCATTTGGTCACGAAAAGAATACAGTCATAATTCTTGGCATTGATGGAAGCTTCTATAGATGCCAATTTGATCCAGTACATGGAGGGGAGATGACTCAGCTGGAATATCATAACTTTTTAAAGCCAGCAACAGAAACAACCATGTGA 1272 0.5142 MATLSACASPPWPNPDQTTSPSSNPNPNFLPEQSQTLDFESLVPPQPKSPKRYRSPAASPPGFSSAAPPTVLHLAFNQDQACFSAATDNGFRIYNCNPFSEQFRREFDGGGIGHVAMLFRCNIIALVGGGPNPHYPPNKVMIWDDHEGCCIGDLSPRAAVRSVRLRRDRIIVAVEQRILVYNFQDLNLLHQIETYPNPKGLCAVSQLSDSFVLACLGLQKGQIRVEHYSQKKTKFISAHDSRITCFALTLDGQLIATASSKGTLIRIFDTVQGTLLQEVRRGANVAEIYSLAFSSTARWLAVSSDKGTVHVFSLKVNSSISEEEKPQNPSNSDTAITPSNSSRSFIKFKGVLPKYFNSEWSVAQFRLQEGSHYIVAFGHEKNTVIILGIDGSFYRCQFDPVHGGEMTQLEYHNFLKPATETTM 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02901 423 MobiDBLite consensus disorder prediction 21 42 - -
Vian2g02901 423 FunFam Autophagy-related protein 18a isoform A 69 400 - -
Vian2g02901 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 67 414 - -
Vian2g02901 423 SUPERFAMILY WD40 repeat-like 67 328 IPR036322 GO:0005515
Vian2g02901 423 Gene3D - 54 395 IPR015943 GO:0005515
Vian2g02901 423 MobiDBLite consensus disorder prediction 1 64 - -
Vian2g02901 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Vian2g02901 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Vian2g02901 423 SMART WD40_4 53 95 IPR001680 GO:0005515
Vian2g02901 423 Pfam WD domain, G-beta repeat 286 312 IPR001680 GO:0005515
Vian2g02901 423 Pfam WD domain, G-beta repeat 233 268 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02901 Vian-Chr2 49756343 49759656 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02901 K22991 - gmx:100781692 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02901 2 49756343 49759656 Vian2g02901 2 49756343 49759656 ECH
Vian2g02901 2 49756343 49759656 Vian3g01399 3 15380654 15383248 ECH