Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00654 ATGGCATTGGCTCCTGTTCCAAAAGTGGTATTTGGTTTAATTGCATTTGCAATTTTCTGGGTCTTGGCAGTTTTCCCAGCTGTGCCGTTTCTACCTATTGGAAGAACTGCAGGGTCCCTCTTTGGAGCCATGCTTATGGTCCTATTCCAAGTTGTTACTCCAGATGATGCTTATGCCACGATTGATCTTCCAATTCTTGGTCTTCTCTTTGGGACAATGGTTGTCAGTGTCTATCTTGAAAGAGCTGACATGTTCAAGTATATAGGGAAGTTGCTGGCTTGGAAGAGTAGAGGTTCAAAGGACTTACTTTGTAGGATATGTGTTATCTCTGCTGTCTCAAGTGCTCTCTTCACAAATGACACCTCTTGTGTGGTTTTGACTGAATTCATATTGAAAATTGCTAGGCAGCATAACCTTCCACCAACACCCTTTCTACTTGCCCTTGCTTCGAGTGCTAATATTGGGTCTTCAGCAACTCCAATTGGCAACCCCCAGAACCTGGTTATAGCTGTTCAGAGTAAAATATCATTTGGTAATTTTCTGGTTGGTATTCTTCCAGCTATGGTGGCAGGAGTTGTAGCAAATGCTACAATTCTTCTAATCATGTATTGGAAGTTATTGTCCGTTCATAAGGACGAAGAAGATTCAGGGGCAGAAGCTGTGGTAGAGGAGTATGATTCTCATCGGTTTTCTCCTGCCACTATGTCTCATTTTTCATCCTTGAATTCTCAAGAATGGAATTCCCATCTTGAAGCTATCAGTGTTCAGAACTCTCCTCAACAGATTCTAAGAAACCGATCAATTGCAAGTGAAATTATTGGGGTTTCGAGCAACACTTTTGATTCTGCAAGAATCTCAAGTTTACCAAGGGATGGAACAAATGGTGTGCCATCTCTGACAAAGGAGGAAACTAGTCCTACAAGTTCTTCAGCAACAGTGGATACACTAATTCACCCTTCCGAAAGAAAAAACAATCTTATCATAAGATGGAAGAGGGTACTGTGGAAATCTTGTGTTTACATCATCACAGTTGGAATGTTGGTTGCTTTACTTCTAGGTTTAAATATGTCATGGACTGCAATTACTGCGGCACTTGCCCTTATCGTTCTTGATTTCAAAGATGCTAGGCCATGTTTAGAAAAGGTTTCATATTCACTTTTGATATTCTTTTGTGGAATGTTTATCACGGTAGATGGCCTCAACAAAACTGGGATTCCAAGTGCTTTGTGGGACATAATGGAGCCCTATTCTCACGTTGATCGGGCTAGTGGAGTTGCAATTCTTGCAGTTGTCATACTTGTATTATCAAATTTGGCTTCAAATGTGCCGACAGTTCTGTTGCTTGGAGGACGTGTAGCAGCCTCAGCTGCTGCAATTTCCAAAGCAGATGAGAAGAAGGCATGGCTGATATTGGCTTGGGCCAGCACCATATCAGGGAATCTCTCACTGTTGGGATCAGCTGCTAACTTGATAGTGTGTGAACAGGCTATCCGTGCTCCAAACCTACCATACACGTTAACCTTCTGGAGTCACCTCAAATTTGGCATTCCCTCCACGATCATAGTCACAGCTATAGGTTTGACATTCATAAGATGA 1596 0.4211 MALAPVPKVVFGLIAFAIFWVLAVFPAVPFLPIGRTAGSLFGAMLMVLFQVVTPDDAYATIDLPILGLLFGTMVVSVYLERADMFKYIGKLLAWKSRGSKDLLCRICVISAVSSALFTNDTSCVVLTEFILKIARQHNLPPTPFLLALASSANIGSSATPIGNPQNLVIAVQSKISFGNFLVGILPAMVAGVVANATILLIMYWKLLSVHKDEEDSGAEAVVEEYDSHRFSPATMSHFSSLNSQEWNSHLEAISVQNSPQQILRNRSIASEIIGVSSNTFDSARISSLPRDGTNGVPSLTKEETSPTSSSATVDTLIHPSERKNNLIIRWKRVLWKSCVYIITVGMLVALLLGLNMSWTAITAALALIVLDFKDARPCLEKVSYSLLIFFCGMFITVDGLNKTGIPSALWDIMEPYSHVDRASGVAILAVVILVLSNLASNVPTVLLLGGRVAASAAAISKADEKKAWLILAWASTISGNLSLLGSAANLIVCEQAIRAPNLPYTLTFWSHLKFGIPSTIIVTAIGLTFIR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00654 531 MobiDBLite consensus disorder prediction 287 313 - -
Vian3g00654 531 Pfam Citrate transporter 27 477 IPR004680 GO:0016020|GO:0055085
Vian3g00654 531 CDD YbiR_permease 28 530 - -
Vian3g00654 531 PANTHER TRANSPORTER ARSB-RELATED 1 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00654 Vian-Chr3 6634448 6638353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00654 - - gmx:100781849 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01043 8 27597264 27601051 Vian3g00654 3 6634448 6638353 ECH
Vian3g00654 3 6634448 6638353 Vian3g00654 3 6634448 6638353 ECH
Vian8g01045 8 27680951 27682839 Vian3g00654 3 6634448 6638353 PCT
Vian3g00654 3 6634448 6638353 Vian8g01043 8 27597264 27601051 PCT