Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03063 ATGGCGGCAGCGAAGAGCGAAGACCCAGAAAAAGCCCACGTGGAAGAAGAAGAAGAGTCTCCAATAGAAGAAGTAAGATTAACGGTGAAGAACACGGATGACCCGACCCAGCCGGTATGGACCTTCCGAATGTGGTTCCTGGGTTTGGTCTCCTGCTCCCTCTTGTCCTTCCTCAACCAGTTCTTCGCCTACCGGACGGAGCCACTCGTCATCACTCAGATAACCGTGCAGGTGGCCACCCTCCCCATCGGCCACCTCATGGCGGCGGTCCTCCCCAAAACCACTTTCCGGATCCCCGGGTTCGGGTCGAGGCAGTTCTCATTCAACCCGGGCCCCTTCAACATGAAGGAGCACGTCCTGGTGACCATATTCGCCAACGCAGGCAGCGGATTCGGGTCCGGGTCGCCCTACGCGGTGGGCATCATAAACATCGTGAAAGCCTTTTACGGAAGGAAAATATCTTTCCTTGCTTCATGGCTCCTCGTCATCACCACTCAGGTGTTAGGATACGGTTGGGCAGGGTTGCTGAAGAAGTACGTGGTGGAGCCTGCCCACATGTGGTGGCCCAGTGCCCTCGTTCAGGTCTCTCTTTTCCGGGCTTTGCATGAGAAAGATGATGGCAGGTTTTCGAGGGCAAAGTTTTTCTTTATTGCACTGGTTTGCAGTTTTTTTTGGTATGTGATCCCTGGATACTTCTTCTCAACGCTCACAAACATATCATGGGTGTGTTGGATATTCTCCAAGTCAGTCACGGCTCAGCAGCTAGGTTCGGGAATGAATGGCTTGGGACTTGGTGCAATCACACTAGACTGGTCTGCTGTAGCATCATTCTTGTTCAGCCCTCTCATCTCACCCTTCTTTGCCATTGTCAATATTTTTGTTGGCTACTCAGTCACAGTGTATCTTGTGATTCCTGTAGCATACTGGGGCCTCAACTTGTACAATGCAAATAGGTTTCCTATTTTCTCATCAGACTTGTTCACATCCAATGGCCAACAATACGACATATCTGCAATTGTCAACGAAAAGTTTGAGTTAGATCTTGACAAGTATCACCAACAAGGTCGAATTAATCTTAGTGTTTTCTTCTCTCTCACTTACGGATTTGGATTTGCCACCATATCATCCACCCTTACACACGTTGCTTTCTTCTATGGAAGGGAGATTATGGATCGATATCGTGCTGCAGCAAAAGGTAAAGAAGATATCCACACAAGACTGATGAAAAAATACAAAGACATACCTTCTTGGTGGTTTTATGTGATGCTGGGCGTGACGCTTCTGGTTTCTCTCATGCTATGCATCTTTCTAAATGACCAGGTTCAGATGCCGTGGTGGGGACTTGTCTTTGCTACTGCCTTGGCCTTTATATTTACACTCCCAATTAGCATCATAACTGCTACCACAAACCAGACACCAGGACTAAACATTATTACCGAGTATATCTTTGGTCTCATTTATCCTGGAAGACCAATAGCAAATGTATGCTTCAAAACCTTTGGTTATATAAGCATGGCTCAGGCTGGCTCCTTCCTCAGCGATTTCAAGCTTGGCCACTACATGAAGATCCCTCCAAGATCAATGTTTTTAGTACAGTTCATCGGTACAATTCTTGCTGGAACCATAAGCACTGGTGTAGCATGGTGGTTGCTGGACTCTGTCAATGACATATGCCATAGAGATCTTCTTCCTGACGACAGTCCCTGGACATGTCCAAGTGATCGTGTTTTCTTTGATGCATCAGTTATCTGGGGTCTGGTGGGACCAAGGAGGATCTTTGGTTCTGAAGGAAACTACCGAGCATTGAATTGGTTTTTCCTTGGAGGTGCTATAGGGCCAATACTAGTTTGGCTATTGCATAAGGCATTCCCCAAGCAGTCATGGATTCCTTTGATCAATCTTCCAGTCCTTCTGGGGGCAACTGGGATGATGCCACCGGCAACAGCAATGAACTACAATTCTTGGATTATAATTGGAACCATTTTCAACTTCTTTGTCTTCCGTTACAGGAAGAAGTGGTGGCAGAGATACAACTATGTTCTTTCGGCAGCACTTGATGCAGGGGTTGCTTTTATGGCTGTTGCGCTCTACTTCGCAGTGGGCATTGAAAACAGAAATTGTCCTAGAATAGAATGCTTCCATGCTCTACTTTCTTTTCTCTCAGTCTCGCCATGTTCAGCAACAATATCAGGAAAGTCTATGGACCAGTTCTGA 2214 0.4688 MAAAKSEDPEKAHVEEEEESPIEEVRLTVKNTDDPTQPVWTFRMWFLGLVSCSLLSFLNQFFAYRTEPLVITQITVQVATLPIGHLMAAVLPKTTFRIPGFGSRQFSFNPGPFNMKEHVLVTIFANAGSGFGSGSPYAVGIINIVKAFYGRKISFLASWLLVITTQVLGYGWAGLLKKYVVEPAHMWWPSALVQVSLFRALHEKDDGRFSRAKFFFIALVCSFFWYVIPGYFFSTLTNISWVCWIFSKSVTAQQLGSGMNGLGLGAITLDWSAVASFLFSPLISPFFAIVNIFVGYSVTVYLVIPVAYWGLNLYNANRFPIFSSDLFTSNGQQYDISAIVNEKFELDLDKYHQQGRINLSVFFSLTYGFGFATISSTLTHVAFFYGREIMDRYRAAAKGKEDIHTRLMKKYKDIPSWWFYVMLGVTLLVSLMLCIFLNDQVQMPWWGLVFATALAFIFTLPISIITATTNQTPGLNIITEYIFGLIYPGRPIANVCFKTFGYISMAQAGSFLSDFKLGHYMKIPPRSMFLVQFIGTILAGTISTGVAWWLLDSVNDICHRDLLPDDSPWTCPSDRVFFDASVIWGLVGPRRIFGSEGNYRALNWFFLGGAIGPILVWLLHKAFPKQSWIPLINLPVLLGATGMMPPATAMNYNSWIIIGTIFNFFVFRYRKKWWQRYNYVLSAALDAGVAFMAVALYFAVGIENRNCPRIECFHALLSFLSVSPCSATISGKSMDQF 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03063 737 NCBIfam OPT family oligopeptide transporter 23 702 IPR004813 GO:0035673
Vian1g03063 737 PANTHER ISP4 LIKE PROTEIN 12 706 IPR004648 GO:0055085
Vian1g03063 737 MobiDBLite consensus disorder prediction 1 24 - -
Vian1g03063 737 Pfam OPT oligopeptide transporter protein 40 700 IPR004813 GO:0035673
Vian1g03063 737 NCBIfam small oligopeptide transporter, OPT family 17 704 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03063 Vian-Chr1 50982467 50986831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03063 15 706 Organic Solute Cotransporters AT5G64410 80.202 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03063 - - vra:106766347 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03063 1 50982467 50986831 Vian6g01917 6 36398581 36407276 PCT
Vian6g01916 6 36380853 36385886 Vian1g03063 1 50982467 50986831 PCT