Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00338 ATGTCTGTTGGGAGGATGATGGCTTTTGTGTTTGCTTTTATTGCAATTGTGCTGTGGGGTTGCGCTGAGTGTAAAGAGTGCACAAACAATAATGCTCAATCACATACTTACCGTTACCAGATATTGACATCCACGAATGAATCTTGGAACATAATCTCGCATTATAAATTGGCTCCAAAGGATGACCATGACCATGACCATGACCACGTTTTGGCTGATTTGCTACCAAGGAAGTTGTTGAAAGAGGAACACCAACATGATTGGGATGTGATCTTGAGAAAAACTGAGAAAGTGAGTGTCTTGAAGCCACCACATCAACGCCAAGATTTTCTGAGAGAAGCGTCTCTGCATGATGTGAGATTGCATGAGGGTTCAATCCATGGTCGGGCTCAACAGACAAACTTAGAGTATCTGTTGATGTTGGATGTGGACAGGTTACTCTGGAGCTTTAGGAAGACTGCTGGTCTTCCAACTCCTGGAACACCATATGGAGGATGGGAAGATCCAAAAATAGAGCTTCGAGGTCATTTTGTTGGGCACTACTTGAGTGCATCAGCTTTAATGTGGGCCAGCACACATAATGATATCTTGAAGAAGAAAATGACAGCCATTGTTGCCAATCTCTCAATCTGTCAAGAGAAAATTGGTACAGGGTATCTCTCTGCATTTCCATCTGAATTTTTTGACCGATTTGAAGCTACTGAGCATGTTTGGGCTCCCTATTACACCATTCACAAGATATTGGCTGGCCTTCTGGATCAACATTCTATAGCTAAAAATCCTCAAGCTCTAAATATGGTGAAATGGATGGTAGATTACTTTTTCAACAGAGTACAGAATGTTATAACAAAATTTAGTATAAGTAGACACTATCAATCACTGAATGAGGAAACTGGAGGCATGAATGATGTCCTGTACAAACTATACAGCATAACGGGAGATCAAAGGCATCTACTGTTAGCTCACCTGTTTGACAAGCCATGCTTTTTAGGTTTGCTTGCAGTGAAGGCTAATGATATAGCTAATTTTCATGCTAACACGCATATCCCAGTGGTTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTCTATAAGGAAATAGGAACATTCTTTATGGATATTGTTAACTCTTCTCATACTTATGCGACTGGAGGGACATCAGTCGATGAATTCTGGAGTGATCCAAAGAGAATTGGAGACACCCTAGAATCAACCGACAATGAGGAATCATGCACAACTTACAATATGTTGAAGGTTTCACGACACCTGTTCAGATGGACCAAAAAGGTATCATATGCAGATTATTATGAGCGTGCCTTAACAAATGGTGTATTAAGCATTCAAAGAGGAACAGAACCTGGAGTGATGATATACATGCTTCCTCAAGGTCGCGGGGTTTCCAAGGCTAAAACTAGCCTTGGTTGGGGAACGAAGTTTGACAGTTTCTGGTGCTGCTATGGAACAGGAATTGAATCATTCTCAAAGCTGGGAGATTCCATCTATTTTGAAGAGGGAGGGAAAAATCCTACTCTTTACATTATCCAGTACATATCAAGCTTCTTCAATTGGAAGTTTGGGCAAATTATTGTTAATCAGACAGTTGTTCCAGCTGTTTCATGGGATCCTTTCCTACGAGTGACATTTACATTTTCTCTAGCTAAGAAAACTGGTGCTTTGTCTACACTTAACTTCAGACTACCAACTTGGACACATAAGGATGGTGCAAAGGGTGTTTTGAATAATGAGTCTTTATCTCTGCCAACCCCAGGAAAATTTTTGTCCATTACCAGAAAATGGAATGCTGGTGACAAGCTAAGCCTTCAATTTCCCATTACCCTAAGAACCGAGGCCATAAAAGATGACAGGTCTCAATATGCCTCTATTCAAGCAATTCTATATGGTCCTTATCTTCTTGCTGGTCACACCACTGGTGATTGGGACATCAAAGCTGCACCAAATGCATCTATAGAAGACTGGATCACTCCAATTCCAGCCAGCTACAACAGTCACTTATTCTATTTTTCCCAAGCCTTTGCCAACTCAACTTATGTTTTCACAAACTCCAAGCATCCATTAGCAATGCAAAAATTACCTGTGCCTGGAACTGATTTGGCTCTTCATGCAACTTTTAGAGTTATCCAAGGAAAATCTTCCACAAATTTCACCACATTGACAGATGCTATTGGTAAAACAATAATGCTAGAACCGTTTGATCATCCAGGAATGCGAGTGATTCACCAAGGAAGGGAACATCCTCTTACAGTAGTAGGCTCTTCCTCTGGTGGCTCCTCTTGTGTTTTTGTTGTGGTTCCAGGATTGGATGGACAAAAGGAAACCATATCTTTGGAATCCAAAAGCCATGATGGTTGCTTTGTGCATAGTGGTTTGCATTCTGGTAGAGGAGTGAAACTCAGTTGCAATTCTTCTTCTGATGCTACATTTAAACAATCAGCAAGTTTTATTGCCAAAAGAGGAATAAGCAAATATGATCCTATCAGCTTTGTGGCCAAAGGAGTAAACAAGAATTTTCTTCTGGAGCCGTTATTGGCCTTCAGAGATGAGTCTTATACGGCCTATTTCAACATTAAAGGTTGA 2604 0.4078 MSVGRMMAFVFAFIAIVLWGCAECKECTNNNAQSHTYRYQILTSTNESWNIISHYKLAPKDDHDHDHDHVLADLLPRKLLKEEHQHDWDVILRKTEKVSVLKPPHQRQDFLREASLHDVRLHEGSIHGRAQQTNLEYLLMLDVDRLLWSFRKTAGLPTPGTPYGGWEDPKIELRGHFVGHYLSASALMWASTHNDILKKKMTAIVANLSICQEKIGTGYLSAFPSEFFDRFEATEHVWAPYYTIHKILAGLLDQHSIAKNPQALNMVKWMVDYFFNRVQNVITKFSISRHYQSLNEETGGMNDVLYKLYSITGDQRHLLLAHLFDKPCFLGLLAVKANDIANFHANTHIPVVVGSQMRYEVTGDPLYKEIGTFFMDIVNSSHTYATGGTSVDEFWSDPKRIGDTLESTDNEESCTTYNMLKVSRHLFRWTKKVSYADYYERALTNGVLSIQRGTEPGVMIYMLPQGRGVSKAKTSLGWGTKFDSFWCCYGTGIESFSKLGDSIYFEEGGKNPTLYIIQYISSFFNWKFGQIIVNQTVVPAVSWDPFLRVTFTFSLAKKTGALSTLNFRLPTWTHKDGAKGVLNNESLSLPTPGKFLSITRKWNAGDKLSLQFPITLRTEAIKDDRSQYASIQAILYGPYLLAGHTTGDWDIKAAPNASIEDWITPIPASYNSHLFYFSQAFANSTYVFTNSKHPLAMQKLPVPGTDLALHATFRVIQGKSSTNFTTLTDAIGKTIMLEPFDHPGMRVIHQGREHPLTVVGSSSGGSSCVFVVVPGLDGQKETISLESKSHDGCFVHSGLHSGRGVKLSCNSSSDATFKQSASFIAKRGISKYDPISFVAKGVNKNFLLEPLLAFRDESYTAYFNIKG 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00338 867 PANTHER PROLINE-TRNA LIGASE (DUF1680) 22 865 - -
Vian11g00338 867 SUPERFAMILY Six-hairpin glycosidases 174 470 IPR008928 GO:0005975
Vian11g00338 867 Gene3D - 727 850 - -
Vian11g00338 867 SUPERFAMILY AbfB domain 736 848 IPR036195 GO:0046373|GO:0046556
Vian11g00338 867 Pfam Beta-L-arabinofuranosidase, GH127 118 642 IPR012878 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00338 Vian-Chr11 3186951 3192163 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00338 K09955 - gmx:100791803 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00338 11 3186951 3192163 Vian11g00338 11 3186951 3192163 ECH
Vian11g00338 11 3186951 3192163 Vian5g01378 5 36407076 36413072 PCT
Vian5g01379 5 36423683 36427997 Vian11g00338 11 3186951 3192163 PCT