Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01379 ATGAAGGCTTTTGTGTCTGTGTTTGTCGTGCTGGTGTTGTGCGGTTGTGCTGCTGCTATTAAAGAATGTACAAACATTCCTACGCAATCTCATACCTTCACGCATCAGCTATTGTCATCCAAGAATGAAACGTGGAAGGAAGAGGTGATGTCTCACTACCATTTGACGCCAACGGATGAATCTGCGTGGGCTGATATGCTGCCGAGGAAGTTCTTGTCGGAACGACAACAACATGATTGGGCGGTTATGTATAAGAAAATTAAGAACATGGGTGTGTTCGAGTCACCCCAAGGTTTTCTGAAAGAAGTGCCTCTTGAGGATGTGAGGTTGCATGAGAATTCCATCCATGGCACAGCACAGCGAACAAACTTGGAGTATCTGTTGATGTTTGATGTCGACAGGTTGATTTGGAGCTTCAGGAAGACAGCGGGTTTACCCACGCCTGGTACTCCATATGGAGGATGGGAAGAACCCAAAGAAGAACTCAGGGGTCATTTTGTTGGGCATTACTTGAGCGCATCATCTCTAATGTGGGCCAGCACACAGAACGATGAGCTGAAACAGAAAATGACATCTCTTGTTGCTGGTCTGTCTGCCTGTCAGGAGAAAATTGGAACGGGATATCTATCTGCATTTCCATCTGAGCTTTTTGATAGATTTGAAGCTATTCAAATAGTTTGGGCTCCATATTATACCATTCACAAGATTATGGCTGGTCTCTTGGATCAATATACATTTGCTGGAAACTCTCAAGCTCTAAAAATGGTAATTCGGATGGTTGACTACTTCTACAACAGAGTGCAAAATGTAATAACAAAGTACACTATCAATAGACACTATCAATCACTGAACACGGAAACTGGAGGAATGAATGATGTTCTTTACCGATTATACAGCATAACAGCTAATGACATAGCTGACTTGCATGCTAATACGCATATCCCAATTGTCGTTGGATCTCAAAGGCGATATGAAATCACAGGCGATCCACTTCATAAGGTTTCACGCCACCTGTTTAGATGGACCAAAGAAGTATCTTATGCAGACTATTATGAGCGTGCATTAACCAATGGAGTGCTCAGCATTCAGAGAGGAACAGATCCTGGAGTGATGATTTACATGCTTCCACTTGGTCCTGGGGTTTCCAAGGCTCATACTTACCATAGTTGGGGAACACCGTTTGACACTTTCTGGTGCTGCTATGGAACGGGAATTGAATCATTCTCAAAGTTGGGAGATTCTATATATTTCGAGGAAGAAGGGGGAAATTCTACACTTTACATCATTCAGTACATATCGAGCTCATTTAACTGGAAATCTGGAAAAATTTTGCTCAATCAGACAGTTGTTCCAGCTGCTTCCTGGGATCCTTACTTACGAGTGACATTTACGTTTTCTCCATCTGAGATTAAGCGTCTTCATAATCTGGGCATGATTCGCACTGTTACTGTGATGATTTTATTTTTCAATGTGTTAAATCCTTTTCATAATGCTTTACTTCTGCAGAAAACTTGGACTACATTGAACTTTCGAGTGCCTACTTGGACTAGTCTAGATGGTGCCAAGGGGATATTAAATGGTGAAACTTTATCTCTTCCAACTCCAGATGACAGGCCTGAATTTGCATCTACTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCCGGTCATACCCTCGGTGGTGATTGGCACCTTAAATCTGGGGCAGACTGGATTACTCCTGTTCCTGCCAGTTACAATAGTCAACTAGTTTCTTTTTCCCAATACTTCAAAAATTCAACTTTTGTTTTGGCAAATTCAAACCAAACTCTGGGTATGCAAAAGTTTCCTAAATCTGGAACTGATATGGCTGTTCAGGCAACTTTTAGGCTTGTCCCAAAAGAATCTTCCTCAAAGTTTTCAACGTTAGCAGATGCTAATGATAGATCAGTGATGTTAGAACCATTTGATCTTCCTGGAATGAACGTGGTTCACCAAGGAGCAGATAAACCTCTTGTGATTGAAGATTCTTCCAAGGGCACGTCATCTTCTGTTTTTGTTGTGGTACCAGGATTAGATGGAAGAAATGGAAGCATATCTTTAGAATCACAGAGTGACAAGGGCTGCTATGTGTATAGTGATTTGAGCTCTAGCGCAGGAGTGAAGCTAAGTTGCAAATCTGATTCTGATGCTAAGTTCAACGAAGCAACAAGCTTTATTTCTCAAAAGGGACTGAGCCAATACAATCCTATCAGTTTTGTGGCTAAAGGAGTAAACAGGAACTTTCTTTTGGAGCCGTTATTCTCATTCAGAGATGAGTATTACACAGTTTATTTCAACATTGTAGGTTGA 2331 0.414 MKAFVSVFVVLVLCGCAAAIKECTNIPTQSHTFTHQLLSSKNETWKEEVMSHYHLTPTDESAWADMLPRKFLSERQQHDWAVMYKKIKNMGVFESPQGFLKEVPLEDVRLHENSIHGTAQRTNLEYLLMFDVDRLIWSFRKTAGLPTPGTPYGGWEEPKEELRGHFVGHYLSASSLMWASTQNDELKQKMTSLVAGLSACQEKIGTGYLSAFPSELFDRFEAIQIVWAPYYTIHKIMAGLLDQYTFAGNSQALKMVIRMVDYFYNRVQNVITKYTINRHYQSLNTETGGMNDVLYRLYSITANDIADLHANTHIPIVVGSQRRYEITGDPLHKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGPGVSKAHTYHSWGTPFDTFWCCYGTGIESFSKLGDSIYFEEEGGNSTLYIIQYISSSFNWKSGKILLNQTVVPAASWDPYLRVTFTFSPSEIKRLHNLGMIRTVTVMILFFNVLNPFHNALLLQKTWTTLNFRVPTWTSLDGAKGILNGETLSLPTPDDRPEFASTQAILYGPYLLAGHTLGGDWHLKSGADWITPVPASYNSQLVSFSQYFKNSTFVLANSNQTLGMQKFPKSGTDMAVQATFRLVPKESSSKFSTLADANDRSVMLEPFDLPGMNVVHQGADKPLVIEDSSKGTSSSVFVVVPGLDGRNGSISLESQSDKGCYVYSDLSSSAGVKLSCKSDSDAKFNEATSFISQKGLSQYNPISFVAKGVNRNFLLEPLFSFRDEYYTVYFNIVG 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01379 776 Gene3D - 635 764 - -
Vian5g01379 776 Pfam Beta-L-arabinofuranosidase, GH127 333 530 IPR012878 -
Vian5g01379 776 Pfam Beta-L-arabinofuranosidase, GH127 107 303 IPR012878 -
Vian5g01379 776 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vian5g01379 776 PANTHER PROLINE-TRNA LIGASE (DUF1680) 19 333 - -
Vian5g01379 776 SUPERFAMILY AbfB domain 672 757 IPR036195 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01379 Vian-Chr5 36423683 36427997 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01379 K09955 - gmx:100791803 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01379 5 36423683 36427997 Vian11g00338 11 3186951 3192163 PCT