Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01378 ATGAAGTGTTTCTTGTTTCTGTTTGCGGCCCTTACTTTGTGTGGTGGCTATACTGTGTCTAAGGAATGTACAAACATTCCGACTCAATCTCATTCATTCAGATACGAGTTACTGACATCGAAGAATGTAACATGGCGGGAGGAGGTGATGTCCCACTACCATTTAACTCCAACCGACGAAACTGCCTGGGCTGATTTGCTTCCGAGGAAATTCTTGACAGAACAGAACCAACATGATTGGGGGATGATGTACAAGAAAATTAAGAACATGGGTGTGTCGAAGTCCCCAGAAGGATTTCTGAAAGAAGTGGCTCTTGAGGATGTGAAGTTGGATAAGGATTCAATCCATGGTAGAGCACAGCAGACAAACTTGGAATATCTGTTGATGTTAGATGTTGACAGATTGATCTGGAGCTTTAGAAGGACAGCTGGTCTATCCACTCCTGGTACTCCTTATGGAGGATGGGAAGGTCCTGAAGTTGAACTTCGCGGTCATTTTGTTGGGCATTACTTGAGTGCATCGGCTCTGATGTGGGCCAGCACACAGGATGATAGGCTGAAGCAGAAAATGTCATCTGTTGTTGCTGGCCTGTCTGCTTGTCAGGAGAAAATAGGGACTGGGTATTTATCTGCATTTCCATCTGAGTTGTTTGATCGATTTGAATCTGTTCAACCTGTTTGGGCTCCCTATTATACCATTCACAAGATTTTGGCTGGCCTCTTGGATCAACACACATTTGCTAGAAACCCTCAAGCTCTAAAAATGGTGACATGGATGGTTGACTACTTTTACAAACGGGTACAGAATGTAATAACTAAGTCCACTATCAATAGGCACTATCAATCGCTGAACGAGGAAACAGGAGGAATGAATGATGTGCTTTACAGATTATACAGCATAACAGGAGATTCTAAACATCTATTGTTGGCTCACCTTTTCGACAAGCCGTGCTTTTTAGGGTTGCTTGCAGTGCAGGCTAATGACATAGCTGATTTTCATGCTAATACACACATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGGAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTATGCAACTGGAGGGACATCAGTCAGCGAGTTTTGGAGTAACCCAAAGAGAATAGCAGACAACTTAAGAACGACAGAGAATGAAGAGTCATGCACGACTTATAACATGTTGAAGGTTTCACGCCACCTCTTTAAATGGACCAAAGAAGTGTCTTATGCAGACTATTACGAGCGTGCCTTAACAAATGGAGTGCTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTACATGCTTCCACTTGGTATTGGAGTTTCCAAGGCTAAAACTGGACACAGTTGGGGAACACCGTTTGACTCTTTCTGGTGCTGCTACGGAACTGGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGGGAAAGGCCCTTCACTTTACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGCAAAATCTTCCTCAATCAGACAGCTCTTCCAGCTTCTTCATGGGATCCTTACCTACGAGTCACATTTGCGTTATCTCCTGTTGAGAGTGCTTCGTCTACACTGCACTTTCGACTACCAAGTTGGACTAGTCCAGATGGTGCCAAGGGGGTATTAAATGGTGAATCTTTGTCGCTGCCAACTCCAGGATCTTTTTTGTCAATCACAAGACAATGGAGTGCTAGTGACAAGCTCACTCTTCAGCTGCCCCTTACAGTAAGAACAGAGGCCATAAAAGATGACAGGCCACAATATGCTTCTGTTAAAGCTATTCTTTATGGCCCTTATCTTCTTGCCGGTCATATAAGTGGTGGTGATTGGGACGACCTTAAAATTGAAGCTAACGATGCAGACTGGATCCTTCCTATTCCTGCCAGTTACAATAGCCAACTAGTTTCTTTTTTTCAAGATTTTGAAAAATCGACTTTTGTGTTGGCAAATTCAAACCAATCATTTGCAATGCAGAAGTTGCCTGAATCCGGCACTGATTTGGCTCTTAAAGCAACCTTTAGACTTGTCCTGAAAGAGTCATCCTCAAAGTTTTCAACATTAGCAGATGCTAATGATAGATCAGTGATGTTAGAACCATTTGATCTTCCTGGAATGAACGTGGTTCACCAAGGAGCAGATAAACCTCTTCTGATTGAAGATTCTTCCAAGGGCAAGCCATCTTCTGTTTTTGTTGTGGTACCAGGATTGGATGGAAGAAATGAAACCATATCTTTGGAATCAGAGAATGATAAGGGCTGCTACGTGTATAGTGGTTTGAGCTCTAGTGCAGGAGTCAAGCTCAGTTGCAAATCTGATTCTGATTCTGATTCTTCATTTAACCAAGCAACAAGCTTTGTTGCTAGGGAAGGATTGAGCCAATACCATGCTATCAGTTTTGTGGCTAAAGGGGTTAGCAGGAATTTTCTTTTGCAGCCATTACTCTCCTTCAGAGATGAGCCTTATACAGTATATTTCAACATTCAAGATTGA 2571 0.424 MKCFLFLFAALTLCGGYTVSKECTNIPTQSHSFRYELLTSKNVTWREEVMSHYHLTPTDETAWADLLPRKFLTEQNQHDWGMMYKKIKNMGVSKSPEGFLKEVALEDVKLDKDSIHGRAQQTNLEYLLMLDVDRLIWSFRRTAGLSTPGTPYGGWEGPEVELRGHFVGHYLSASALMWASTQDDRLKQKMSSVVAGLSACQEKIGTGYLSAFPSELFDRFESVQPVWAPYYTIHKILAGLLDQHTFARNPQALKMVTWMVDYFYKRVQNVITKSTINRHYQSLNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHANTHIPVVVGSQMRYEITGDPLYKEIGTFFMDLVNSSHSYATGGTSVSEFWSNPKRIADNLRTTENEESCTTYNMLKVSRHLFKWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGIGVSKAKTGHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGKGPSLYIIQYISSSFNWKSGKIFLNQTALPASSWDPYLRVTFALSPVESASSTLHFRLPSWTSPDGAKGVLNGESLSLPTPGSFLSITRQWSASDKLTLQLPLTVRTEAIKDDRPQYASVKAILYGPYLLAGHISGGDWDDLKIEANDADWILPIPASYNSQLVSFFQDFEKSTFVLANSNQSFAMQKLPESGTDLALKATFRLVLKESSSKFSTLADANDRSVMLEPFDLPGMNVVHQGADKPLLIEDSSKGKPSSVFVVVPGLDGRNETISLESENDKGCYVYSGLSSSAGVKLSCKSDSDSDSSFNQATSFVAREGLSQYHAISFVAKGVSRNFLLQPLLSFRDEPYTVYFNIQD 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01378 856 PANTHER PROLINE-TRNA LIGASE (DUF1680) 19 854 - -
Vian5g01378 856 Gene3D - 712 839 - -
Vian5g01378 856 SUPERFAMILY AbfB domain 749 836 IPR036195 GO:0046373|GO:0046556
Vian5g01378 856 SUPERFAMILY Six-hairpin glycosidases 149 449 IPR008928 GO:0005975
Vian5g01378 856 Pfam Beta-L-arabinofuranosidase, GH127 107 629 IPR012878 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01378 Vian-Chr5 36407076 36413072 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01378 K09955 - gmx:100781521 1493.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00338 11 3186951 3192163 Vian5g01378 5 36407076 36413072 PCT