Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00430 ATGTACAGAGAGCGAGGAGTGGGATCCAAATCGGAGGTAACTTCCGCTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCCGGCATCAACGGCAAGGACCGCTCGTCCTCCTCTTCTCTCTTAGCCGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAATGCTTCTGACGAAGAGTCTGAAACAGACAGCGAGGAGTCTGATGTTAGCGGTTCCGATGGAGATGACACGTCTTGGATCTCGTGGTTCTGCAATTTGAGAGGAAACGAGTTCTTTTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTGTGCGGATTAAGCAGTCAAGTGCCTTACTACGATTATGCTCTGGATTTGATTTTGGATGTTGAGTCCTCCCATGGTGACATGTTTACCGAGGAACAAAATGAGTTAATTGAATCAGCAGCCGAGATGCTATATGGTCTGATTCATGCCCGGTATATACTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCTAGAGTTTACTGCTCTGGACAACCTTGCATTCCAGTTGGTCAGTCAGACATCCCTAGATCCAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGCTCCAAGTATCAAGGCAACATTGACGGAGCTTATTTTGGAACTACATTTCCTCACCTGTTCCTCATGACTTATGGACAACTAAAACCACAGAAACCATCACAGAGCTATGTTCCAAGAGTTTTTGGCTTCAAACTTCACAAGCCTTGA 861 0.482 MYRERGVGSKSEVTSADRKRINDVLDKQLERSSPSTSRAAGINGKDRSSSSSLLAAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00430 286 MobiDBLite consensus disorder prediction 1 27 - -
Vian10g00430 286 SMART CK_II_beta_2 99 282 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 FunFam Casein kinase II subunit beta 92 196 - -
Vian10g00430 286 SUPERFAMILY Casein kinase II beta subunit 97 285 IPR035991 GO:0005956|GO:0019887
Vian10g00430 286 FunFam Casein kinase II subunit beta 197 271 - -
Vian10g00430 286 MobiDBLite consensus disorder prediction 1 95 - -
Vian10g00430 286 PANTHER CASEIN KINASE II SUBUNIT BETA 78 285 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 92 196 IPR016149 GO:0005956|GO:0019887
Vian10g00430 286 PRINTS Casein kinase II regulatory subunit family signature 99 115 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 PRINTS Casein kinase II regulatory subunit family signature 218 239 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 PRINTS Casein kinase II regulatory subunit family signature 116 130 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 PRINTS Casein kinase II regulatory subunit family signature 196 217 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 PRINTS Casein kinase II regulatory subunit family signature 246 263 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 MobiDBLite consensus disorder prediction 28 76 - -
Vian10g00430 286 Pfam Casein kinase II regulatory subunit 99 282 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 ProSitePatterns Casein kinase II regulatory subunit signature. 200 231 IPR000704 GO:0005956|GO:0019887
Vian10g00430 286 Gene3D - 197 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00430 Vian-Chr10 3862738 3865369 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00430 K03115 - gmx:100799304 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00430 10 3862738 3865369 Vian10g00430 10 3862738 3865369 ECH
Vian10g00430 10 3862738 3865369 Vian1g01481 1 16386810 16389034 PCT
Vian1g01479 1 16367088 16369724 Vian10g00430 10 3862738 3865369 PCT