Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01479 ATGAATGATTACAAGGGAAGAGAAGGAGAAAGTGTTGTTGTTCGGAAGCGAATCAAAGATAAGACGCAGCACCAACAACAAGAACAACAACATAATCACCGACAACCCAGTCCTTCCACTGCAAGGCCACCCCAGTTTCACCGTCGCTCCGTCTCCCTCCCTAACAATCAACACGAGGAATCTGAAACAGATAACGAAGGATCTGAAGTTAGTGTTTCAGAAGGGGATGACTCATGCTGGATCTCATGGTTTTGCAATTTGAAAGGAAATGAGTTCTTGTGTGAAGTCGATGATGATTTTGTACAAGACGATTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCATTGGATTTAATTTTGGATGTTGAGCCCTCCCACGGAGACATGTTCACAGAGGAACAGAATGAGTTAATTGAATCTGCAGCGGAGATGCTTTATGGTCTGATTCATGCTAGGTACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTTCAAAAACTTGGACTTTGGCAGATGTCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGACAGTCAGATATTCCTAGGTCAAGTAATGTAAAAATATTTTGCCCCAAGTGTGAAGACACTTATTACCCAAAGTCCAAGTATCAAGACATGGATGGAGCTTATTTTGGAGCTACGTTTCCTCACCTCTTTCTGATGACTTACGGGAATCTGAAGCCACAAAAGCCATCACAGAACTATGTACCAAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGA 798 0.4248 MNDYKGREGESVVVRKRIKDKTQHQQQEQQHNHRQPSPSTARPPQFHRRSVSLPNNQHEESETDNEGSEVSVSEGDDSCWISWFCNLKGNEFLCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVEPSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLHKFKNLDFGRCPRVYCSGQPCLPVGQSDIPRSSNVKIFCPKCEDTYYPKSKYQDMDGAYFGATFPHLFLMTYGNLKPQKPSQNYVPRVFGFKVHKS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01479 265 FunFam Casein kinase II subunit beta 72 176 - -
Vian1g01479 265 PRINTS Casein kinase II regulatory subunit family signature 96 110 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 PRINTS Casein kinase II regulatory subunit family signature 176 197 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 PRINTS Casein kinase II regulatory subunit family signature 79 95 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 PRINTS Casein kinase II regulatory subunit family signature 198 219 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 PRINTS Casein kinase II regulatory subunit family signature 151 172 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 PRINTS Casein kinase II regulatory subunit family signature 225 242 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 Gene3D - 177 250 - -
Vian1g01479 265 Pfam Casein kinase II regulatory subunit 80 261 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 SMART CK_II_beta_2 79 261 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 72 176 IPR016149 GO:0005956|GO:0019887
Vian1g01479 265 MobiDBLite consensus disorder prediction 29 52 - -
Vian1g01479 265 MobiDBLite consensus disorder prediction 1 71 - -
Vian1g01479 265 ProSitePatterns Casein kinase II regulatory subunit signature. 180 211 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 SUPERFAMILY Casein kinase II beta subunit 79 264 IPR035991 GO:0005956|GO:0019887
Vian1g01479 265 FunFam Casein kinase II subunit beta 177 248 - -
Vian1g01479 265 PANTHER CASEIN KINASE II SUBUNIT BETA 58 264 IPR000704 GO:0005956|GO:0019887
Vian1g01479 265 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01479 Vian-Chr1 16367088 16369724 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01479 K03115 - gmx:100789357 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01479 1 16367088 16369724 Vian10g00430 10 3862738 3865369 PCT