Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01481 ATGTATAAAGAACGAGGAGGTGTTGCCGTCACTGTTTCTGCTTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCACCTCGAACGATCCTCGCCCTCCACCTCTCGCCCCATCAACGCCACCTCCAAAAATTCCAACCTCCAAGCGGAGGAATCTGAAACGGAGAGTGAAGAGTCCGATGTTAGCGGTTCGGATGGAGATGACACCTCTTGGATCTCTTGGTTCTGCAATCTTAGGGGAAACGAGTTCTTTTGCGAGGTCGATGATGATTACATCCAGGATGACTTCAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTATGATTATGCCCTTGATTTGATTCTCGATATCGAATCATCCCACGGTGACATGTTCACGGAGGAACAGAACGAGTTGATTGAATCAGCGGCGGAAATGCTTTACGGTCTGATTCATGCCAGATATGTGTTGACCAGCAAAGGAATGACTGCTATGCTTGACAAATACAAGAACTATGATTTTGGTAGATGTCCGAGAGTTTACTGCTCTGGACAGCCCTGCCTCCCAGTTGGTCAATCAGACATTCCTAGGGCGAGTACTGTCAAAATATACTGCCCTAGGTGCGAAGATCTTTACTATCCTCGCTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCTCACCTTTTCTTGATGACATATGGACAACTGAAGCCACAGAAACCATCACAAGGCTATGTTCCGAGAGTTTTTGGGTTCAAAGTCCACAAGCCATAA 786 0.4669 MYKERGGVAVTVSASKSEDRKRINDVLDKHLERSSPSTSRPINATSKNSNLQAEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMTAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRASTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKVHKP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01481 261 MobiDBLite consensus disorder prediction 15 35 - -
Vian1g01481 261 FunFam Casein kinase II subunit beta 172 246 - -
Vian1g01481 261 FunFam Casein kinase II subunit beta 67 171 - -
Vian1g01481 261 SMART CK_II_beta_2 74 257 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 ProSitePatterns Casein kinase II regulatory subunit signature. 175 206 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 SUPERFAMILY Casein kinase II beta subunit 72 260 IPR035991 GO:0005956|GO:0019887
Vian1g01481 261 PRINTS Casein kinase II regulatory subunit family signature 74 90 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 PRINTS Casein kinase II regulatory subunit family signature 193 214 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 PRINTS Casein kinase II regulatory subunit family signature 146 167 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 PRINTS Casein kinase II regulatory subunit family signature 91 105 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 PRINTS Casein kinase II regulatory subunit family signature 221 238 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 MobiDBLite consensus disorder prediction 1 70 - -
Vian1g01481 261 Pfam Casein kinase II regulatory subunit 74 257 IPR000704 GO:0005956|GO:0019887
Vian1g01481 261 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 67 171 IPR016149 GO:0005956|GO:0019887
Vian1g01481 261 MobiDBLite consensus disorder prediction 36 53 - -
Vian1g01481 261 Gene3D - 172 246 - -
Vian1g01481 261 PANTHER CASEIN KINASE II SUBUNIT BETA 53 260 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01481 Vian-Chr1 16386810 16389034 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01481 K03115 - gmx:100793573 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01481 1 16386810 16389034 Vian1g01481 1 16386810 16389034 ECH
Vian10g00430 10 3862738 3865369 Vian1g01481 1 16386810 16389034 PCT