Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01170 ATGAATATTAACTTTCCAACACAATTTCACAGTTTCAAatccaaaaaatcaaatatattcttAAACAATCTCTACTTTGTCACCTTTGCAATTATCCTTTGCACTTTCTTTTACCTCCTTGGTCTCTGGCACCACTATCCTTCCACCACCGTCATCTCCACCACCGGATACTCCACCACCACCGGAGCTACCTCGTTATGCTTCCagaacaccaccaccaccacaaccaccacagtagaatcatcatcatcatcaacatcatcattcgAGAAACTCGAACTCGACTTCACCGCCAGTCACCACCTCCCTGATCCACCACAAACGACGGCGCGTGTATCTCACATCCCACCATGTAACCCCTCTCTCTATGAATACACTCCCTGCGAGGATCAAACAAGGTCATTAACATTTCCTAGAAACAAACTTATGTACCGTGAAAGACACTGTCCATTACAGGAAGAGATTCTCCGGTGTAGGATTCCGGCGCCGTTTGGCTACCGGTTACCGTTTCGGTGGCCGGAGAGTCGTGACTTTGCTTGGTATGCGAATGTGCCGCATAAGGAATTAACTGTTGAGAAGAAAAACCAGAATTGGGTCCGGTTTAATGGGAACCGGTTCAGATTTCCAGGTGGTGGGACCATGTTTCCACGTGGCGCAAATGCGTACGTTGATGATATTGGAAAGTTGATTAATCTTAAAGATGGATCTATCAGAACCGCCATTGATACTGGTTGTGGGgTTGCAAGTTGGGGAGCTTATCTTCTATCACGTGACATATTAACAGTGTCATTTGCACCAAGAGATACTCATGAAGCTCAAGTTCAATTTGCTCTTGAAAGAGGTGTTCCTGCATTGATTGGAATTCTTGCATCAATAAGACTTCCTTACCCTTCAAGAGCTTTTGATATGGCTCATTGCTCAAGGTGTATCATTCCATGGGGACAATATGATGGAATATACTTGACTGAAGTTGATAGAGTACTACGTCCTGGAGGATATTGGATTCTGTCAGGGCCACCAATAAACTGGGAGAGACACTGGTTAGGATGGGAAAGGACTAAGGAGAGTCTCAATGATGAACAAGATACAATTGAGAATGTAGCAAAAAGTTTATGCTGGAAAAAATTGATACAAAAAGGTGACCTTGCAATATGGCAGAAACCAACCAATCATATGCATTgcaaaattaaaagaaagattTTCAAGACTAGACCCTTCTGTCAGGAAACACAGGATCCAGATATGGCTTGgtaCACTAAACTAGATACATGCTTAACCAAACTGCCAGAAGTAAACAACATCAAAGAAATTGCTGGTGGAGAATTATCAAAGTGGCCAAAGAGATTAACTTCAATTCCTCCAAGGATTAGTAGTGAAAGTTTGAATGGTATAACATCAGAAATGTTCAATGAAAATAATGAGTTATGGAAAAAAAGAGTGGCATATTATAAGACCTTAGACTCTCAGCTAGCAGAGAGTGGAAGATATAGAAATCTTCTTGATATGAATTCTTACTTAGGAGGCTTTGCAGCTGCACTTGTTGATGATCCTGTTTGGGTTATGAACATTGTTCCTGTTGAGGCTGAAATCAATACCCTTGGTGTCATATATGAACGTGGACTCATTGGAACCTATCAAAATTGGTGTGAAGCGATGTCCACTTACCCACGAACTTATGACTTCATACATGGTGATTCAGTTTTTAGTCTCTACCAAAACAGATGTAGTATGGAGAACATTCTTCTAGAGATGGACAGGATTTTGCGGCCACAAGGTAGTGTAATTTTGCGCGACGACGTCGATGTGTTGACACAGGTGAAGAGTATTGCAGATGAAATGCAGTGGGATGCAAAAATTACAGACCATGAAGATGGACCTTATGAAAGAGAAAAGATACTTGTAGCAGTCAAACAATACTGGACAGCTCCAGCAATAGAGGAAAACTAA 1947 0.3955 MNINFPTQFHSFKSKKSNIFLNNLYFVTFAIILCTFFYLLGLWHHYPSTTVISTTGYSTTTGATSLCFQNTTTTTTTTVESSSSSTSSFEKLELDFTASHHLPDPPQTTARVSHIPPCNPSLYEYTPCEDQTRSLTFPRNKLMYRERHCPLQEEILRCRIPAPFGYRLPFRWPESRDFAWYANVPHKELTVEKKNQNWVRFNGNRFRFPGGGTMFPRGANAYVDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRDILTVSFAPRDTHEAQVQFALERGVPALIGILASIRLPYPSRAFDMAHCSRCIIPWGQYDGIYLTEVDRVLRPGGYWILSGPPINWERHWLGWERTKESLNDEQDTIENVAKSLCWKKLIQKGDLAIWQKPTNHMHCKIKRKIFKTRPFCQETQDPDMAWYTKLDTCLTKLPEVNNIKEIAGGELSKWPKRLTSIPPRISSESLNGITSEMFNENNELWKKRVAYYKTLDSQLAESGRYRNLLDMNSYLGGFAAALVDDPVWVMNIVPVEAEINTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHGDSVFSLYQNRCSMENILLEMDRILRPQGSVILRDDVDVLTQVKSIADEMQWDAKITDHEDGPYEREKILVAVKQYWTAPAIEEN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01170 648 PANTHER GENERIC METHYLTRANSFERASE 11 645 - -
Tsu08g01170 648 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 479 616 IPR029063 -
Tsu08g01170 648 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 143 390 IPR029063 -
Tsu08g01170 648 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 124 637 IPR004159 GO:0008168
Tsu08g01170 648 Gene3D Vaccinia Virus protein VP39 212 392 IPR029063 -
Tsu08g01170 648 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 11 645 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01170 Tsu-Chr8 12925766 12932521 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01170 - - gmx:100813493 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01170 08 12925766 12932521 Tsu08g01170 08 12925766 12932521 ECH
Tsu08g01170 08 12925766 12932521 Tsu04g01706 04 18118041 18122950 ECH
Tsu04g01704 04 18101462 18106745 Tsu08g01170 08 12925766 12932521 PCT