Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00422 ATGGCAACTGATGATTCTGTGAATAGTGTCGGTGGTGGTGTTAAGGACCATTATGGTGAGGATAGTGCTACAGAAGATCAACTTATCACACCATGGAATTTCTCTGTTGCTAGTGGACACACTTTGCTGAGAGATCCACGTTACAACAAAGGACTTGCCTTCACTGAGAAAGAAAGAGATTCTCATTATGTTCGCGGCCTTTTGCCTCCGGCTATCTTCACTCAAGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGTCAGTATGACGTGCCTCTTCACAAGTACATAGCCTTAATGGATCTTCAAGAGAGAAACGAAAGGCTGTTTTACAAGATTCTGATTGAAAATGTCGAAGAATTGCTTCCTGTTGTTTATACTCCAACAGTTGGAGAGGCCTGCCAGAAATATGGAAGCATTTATAGGCGTCCTCAGGGTCTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTCGAGGTGCTTAAAAACTGGCCAGAAAAGACTATTCAAGTTATTGTCGTGACTGACGGTGAACGTATATTAGGACTAGGAGATCTTGGTTGCCAGggaATGGGAATTCCTGTTGGAAAACTTTCTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCATCGTGCTTGCCTATAACCATTGATGTCGGAACAAACAATGAGAAGTTGCTGAATGATGAATTTTACATTGGCCTTAGACAGAAGCGAGCAACTGGGAAGGAATATGCTGAGCTTCTAGAAGAGTTTATGCATGCAGTTAAGCAGAACTATGGGGAAAAAGTTCTTGTACAGtttgaAGATTTCGCGAATCATAATGCGTTCGAACTTCTGGATAAATACAGTTCATCTCATCTTGTTTTTAATGATGATATACAAGGTACAGCTTCTGTGGTATTAGCAGGATTGCTTGCTTCCCTTAAATTAATTGGGGGAACCTTAGCTGACCACACATTCTTATTCTTGGGAGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTAATTGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTTGAAGAGACTCGCAAGAAGATTTGGCTTGTGGATTCCAAGGGTCTTATCGTTAGCTCTCGTCAGCAATCCCTTCAACACTTCAAAAAGCCTTGGGCTCATGAGCATGAACCTGTTAAGGACCTTCTAAATGCTGTCAAGGCCATCAAACCAACTGTATTGATCGGAACATCTGGAGTAGGAAAGACATTTACCAAGGAGGTAGTTGAAGCCATGGCATCCTTGAATAAGAAACCTCTCATTTTTGCACTCTCCAATCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGCAAAGCAATTTTTGCTAGTGGAAGTCCATTTGATCCTGTTGAATATGAAGGAAAAGTTTTTGTTCCTGGACAGGGCAACAATGCTTACATTTTTCCTGGCTTTGGTTTGGGTTTAATCATGTCTGGTGCAATCCGCGTGCGTGACGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCACAAGTATCACAGGAGAACTATGATAAGGGACTGATATACCCTCCATTCACAAATATCAGAAAGATATCAGCCAACATTGCTGCTAGTGTTGCAGCCAAGGCATACGAACTTGGTCTGGCTTCTCATCTACCTCGACCAAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTATCGAAGCTACCTTtga 1737 0.426 MATDDSVNSVGGGVKDHYGEDSATEDQLITPWNFSVASGHTLLRDPRYNKGLAFTEKERDSHYVRGLLPPAIFTQELQEKRLMHNLRQYDVPLHKYIALMDLQERNERLFYKILIENVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYAELLEEFMHAVKQNYGEKVLVQFEDFANHNAFELLDKYSSSHLVFNDDIQGTASVVLAGLLASLKLIGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRQQSLQHFKKPWAHEHEPVKDLLNAVKAIKPTVLIGTSGVGKTFTKEVVEAMASLNKKPLIFALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVFVPGQGNNAYIFPGFGLGLIMSGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFTNIRKISANIAASVAAKAYELGLASHLPRPKDLVKYAESCMYSPGYRSYL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00422 578 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 20 293 IPR046346 -
Tsu07g00422 578 Pfam Malic enzyme, NAD binding domain 294 546 IPR012302 GO:0051287
Tsu07g00422 578 ProSitePatterns Malic enzymes signature. 290 306 IPR015884 GO:0004471
Tsu07g00422 578 Gene3D - 37 291 IPR037062 GO:0004471
Tsu07g00422 578 PANTHER MALIC ENZYME 8 577 - -
Tsu07g00422 578 PANTHER MALIC ENZYME-RELATED 8 577 - -
Tsu07g00422 578 PIRSF ME 14 578 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 PRINTS Malic enzyme signature 169 198 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 PRINTS Malic enzyme signature 321 337 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 PRINTS Malic enzyme signature 290 306 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 PRINTS Malic enzyme signature 265 283 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 PRINTS Malic enzyme signature 109 133 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 PRINTS Malic enzyme signature 424 440 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 PRINTS Malic enzyme signature 205 227 IPR001891 GO:0004470|GO:0004471
Tsu07g00422 578 SMART Malic_M_2 294 547 IPR012302 GO:0051287
Tsu07g00422 578 Pfam Malic enzyme, N-terminal domain 103 283 IPR012301 GO:0004471
Tsu07g00422 578 CDD NAD_bind_1_malic_enz 294 572 - -
Tsu07g00422 578 SMART malic_2 103 284 IPR012301 GO:0004471
Tsu07g00422 578 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 294 577 IPR036291 -
Tsu07g00422 578 MobiDBLite consensus disorder prediction 1 21 - -
Tsu07g00422 578 Gene3D - 292 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00422 Tsu-Chr7 3250404 3254487 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00422 K00029 - gmx:100818219 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00422 07 3250404 3254487 Tsu07g00422 07 3250404 3254487 ECH
Tsu02g00246 02 2084021 2088265 Tsu07g00422 07 3250404 3254487 ECH
Tsu02g05422 02 62724287 62729701 Tsu07g00422 07 3250404 3254487 ECH