Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05422 ATGATCTCTTCAACCAGATGCACTTTCCTGGGTAATACAGGATTAGGTGGGTGTGGTAATTTTCATGGAGGTCAGAGAAGAAATTGTGGTCCTTGGAGGGTGACGTGTATGTCACCAAGCAATGACAGAAATGGCAGTGTTGTTAATGTGATGGAGACACCtttgaaagaaattaaaaaggAGCATGTGGAGGTGGAGGTGGTGGAGGATGTTGATGATAATCCGATCTCCGGTGGCGGTCCTCGTGATGTTTATGGCGAAGATAAGGCCACTGAGGATCACTTTGTAACTCCATGGAGTGTGTCTGTTGCTAGTGGTTATACATTGTTGCGAGATCCACACTTCAACAAAGGGTTAGCTTTCACTGAAAAAGAGAGGGATGCACACTACTTGCGTGGTCTTCTTCCTCCAACAGTTATACCTCAAGACACTCAAGTGAAGAAAATGATCCAGCACATACGTCAATATCAAGTTCCGTTACAGAGGTACACGGCAATGATGGATCTTCAGGAAAGAAATGAACGTTTGTTTTACAAACTTCTCATTGAACACGTTGAAGAATTGCTCCCAATTGTGTATACTCCAACTGTTGGTGAGGCATGCCAAAAATACGGAGACATTTTTATGCGACCACAGGGTCTTTATATTAGTTTGAAAGAGAAGGGGAGGATTCTTGAAGTTCTGAGGAATTGGCCTGAAAAGAACATTCAAGTCATAGTTGTAACTGATGGAGAACGGATCTTGGGTCTTGGGGATCTAGGTTGTCAGGGAATGGGAATACCGGTGGGAAAACTTTCTTTATATACGGCACTAGGAGGAGTTCGTCCTTCAGCTtgCTTGCCTATTACTATTGACGTGGGGACAAACAATGAGAAGCTGCTCAATGATGAATTATATATTGGGCTAAAGCAAAGACGAGCAGTCGGGCAGGAATATTCTGAACTGTTGCACGAATTTATGACTGCAGTCAAGCAAACTTACGGTGAAAAAGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTTGAAAAATATAGATCAACACATCTGGTTTTTAACGACGATATTCAGGGAACGGCGTCTGTTGTTCTTGCTGGACTAGTTGCTGCTTTGAAATTAGTTGGTGGAAACTTAGCTGACCACAGATTCTTATTCCTCGGTGCTGGAGAGGCGGGCACGGGAATCGCTGAACTCATTGCACTTGAAACATCGAAACAGACAAATCTTCCGTTGGAGGAAGTGCGCAAGAATATTTGGTTGGTAGACTCAAAGGGATTGATTGTCAGATCGCGTAAAGAATCCCTCCAACATTTCAAGAAGCCGTGGGCTCATGAACACGAACCTGTGAAAAACCTTCTCGATGCTGTTAATAAAATTAAGCCAACAGTGCTTATCGGAACATCAGGACAAGGAAGAACTTTTACCAAAGAAGTGATTGAGGCGATGACTTCTATTAACGAGAAACCTATTATCCTTTCTCTTTCCAACCCAACGTCACAGTCAGAATGTACTGCTGAAGAAGCTTATAAGTGGAGCAAGGGACGTGCTATTTTTGCAAGTGGAAGCCCATTTCCACCGGTTGAATATAACGGGAAAGTGTTTACGCCTGGCCAGGCAAACAATGCATACATATTTCCTGGGTTCGGTCTAGGTTTAATAATGTCCGGTACTATTCGTGTACACGACGACCTGCTTTTAGCTGCATCTGAGGCATTGGCTGCACAAGTATCAGAAGAGAACTTTGAGAAGGGTTTGATATTCCCACCATTCACCAACATCAGAAAGATTTCAGCTCACATAGCTGCCAAAGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCCACTCGCCTTCCACAGCCCAAAGATTTGGTGAAGTTTGCCGAGAGCTGTATGTATACCCCAGCCTACAGAACCTACCGGTGA 1938 0.434 MISSTRCTFLGNTGLGGCGNFHGGQRRNCGPWRVTCMSPSNDRNGSVVNVMETPLKEIKKEHVEVEVVEDVDDNPISGGGPRDVYGEDKATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVIPQDTQVKKMIQHIRQYQVPLQRYTAMMDLQERNERLFYKLLIEHVEELLPIVYTPTVGEACQKYGDIFMRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRAVGQEYSELLHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNLPLEEVRKNIWLVDSKGLIVRSRKESLQHFKKPWAHEHEPVKNLLDAVNKIKPTVLIGTSGQGRTFTKEVIEAMTSINEKPIILSLSNPTSQSECTAEEAYKWSKGRAIFASGSPFPPVEYNGKVFTPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVSEENFEKGLIFPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRTYR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05422 645 CDD NAD_bind_1_malic_enz 361 639 - -
Tsu02g05422 645 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 75 645 - -
Tsu02g05422 645 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 361 644 IPR036291 -
Tsu02g05422 645 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Tsu02g05422 645 SMART Malic_M_2 361 614 IPR012302 GO:0051287
Tsu02g05422 645 Gene3D - 104 358 IPR037062 GO:0004471
Tsu02g05422 645 SMART malic_2 170 351 IPR012301 GO:0004471
Tsu02g05422 645 ProSitePatterns Malic enzymes signature. 357 373 IPR015884 GO:0004471
Tsu02g05422 645 PANTHER MALIC ENZYME-RELATED 75 645 - -
Tsu02g05422 645 PRINTS Malic enzyme signature 357 373 IPR001891 GO:0004470|GO:0004471
Tsu02g05422 645 PRINTS Malic enzyme signature 491 507 IPR001891 GO:0004470|GO:0004471
Tsu02g05422 645 PRINTS Malic enzyme signature 176 200 IPR001891 GO:0004470|GO:0004471
Tsu02g05422 645 PRINTS Malic enzyme signature 388 404 IPR001891 GO:0004470|GO:0004471
Tsu02g05422 645 PRINTS Malic enzyme signature 272 294 IPR001891 GO:0004470|GO:0004471
Tsu02g05422 645 PRINTS Malic enzyme signature 332 350 IPR001891 GO:0004470|GO:0004471
Tsu02g05422 645 PRINTS Malic enzyme signature 236 265 IPR001891 GO:0004470|GO:0004471
Tsu02g05422 645 Gene3D - 359 645 - -
Tsu02g05422 645 Pfam Malic enzyme, NAD binding domain 361 613 IPR012302 GO:0051287
Tsu02g05422 645 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 88 360 IPR046346 -
Tsu02g05422 645 Pfam Malic enzyme, N-terminal domain 170 351 IPR012301 GO:0004471
Tsu02g05422 645 PIRSF ME 57 645 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05422 Tsu-Chr2 62724287 62729701 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05422 K00029 - gmx:100791514 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00246 02 2084021 2088265 Tsu02g05422 02 62724287 62729701 ECH
Tsu02g05422 02 62724287 62729701 Tsu02g05422 02 62724287 62729701 ECH
Tsu02g05422 02 62724287 62729701 Tsu07g00422 07 3250404 3254487 ECH