Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00246 atgGAAAACACACTTAAGCCTTTAAGAGATGGTGAGTCCGTGCTGGATTGCCTCAGCCCAAGATCCAGCGTAGCTGGCGGTGTTGAGGATGTCTACGGTGAAGATCGTGCCACCGAAGACCAACTCGTCACCCCTTGGACTTTCTCTGTTGCCAGTGGTTACTCTTTGCTGAGAGATCCACAGTACAACAAAGGGCTTGCTTTCACTGAGAAAGAGAGGGATGCACATTATTTGCGTGGCCTCTTACCTCCTACTGTCAGCTCCCAGCAACTTCAGGAGAAGAAACTTATGCACAACATTCGCCAATATGAGGTTCCTTTGCAAAAGTACACGGCCATGATGGACCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTTCTTATTGATAATGTTGAGGAATTGCTCCCAATTGTATATACTCCGGTTGTCGGTGAGGCTTGCCAGAAATATGGTAGCATATTCAAGCGTCCTCAGGGTCTATACATTAGTTTGAAAGAGAAGGGAAAAATTCTCGAGGTATTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTGTAACTGATGGTGAGCGGATTTTGGGACTCGGCGATCTAGGATGCCAGGGTATGGGAATTCCTGTTGGTAAATTGGCTTTGTACACAGCGCTAGGAGGAGTTCGTCCTTCAGCATGTTTACCAGTTACAATTGATGTCGGAACAAATAATGAGACATTACTGAATGACGAGTTTTACATTGGGCTTAGACAAAAAAGGGCAACTGGGAAGGAATACTATGACCTTCTGCACGAGTTCATGAGCGCAGTGAAGCAAAACTACGGCGAAAAAGTTCTTGTTCAGTTTGAAGATTTTGCAAATCACAATGCATTTGAGTTGCTTGCAAAATACGGTACAACTCATCTTGTTTTCAATGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCCTGAAGCTCATTGGTGGTACCCTACCTGACCATAAATTCCTCTTCCTTGGTGCTGGAGAAGCAGGAACTGGTATAGCAGAGCTAATTGCTCTTGAGATATCAAAACAGACTAAAGCACCTATTGAAGAGAGTCGTAAGCAGATATGGCTGGTAGACTCAAAGGGTTTAATTGTTAGTTCACGTGCGAATTCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAACACGAGCCTGTTAGCACTCTCATAGAGGCCGTTAAGGTAATCAAGCCTACAGTTCTGATTGGATCATCAGGAGTTGGGAAAACATTTACAAAGGAAGTAGTTGAGGCTATGACAGCAAACAATAAAACTCCTCTCATATTGGCTCTTTCCAACCCAACCTCACAGTCTGAGTGTACAGCTGAAGAGGCATACACATGGAGTGAGGGTCGTGCAATTTTCGCTAGCGGGAGTCCATTTGATCCTATTGAATACAACGGCAAAACTTATTATTCTGGCCAGTCCAACAATGCTTATATTTTCCCGGGTTTTGGTTTGGGTTTAGTAATGTCTGGAGCAATTCGAGTACATGACGATATGCTTCTAGCAGCCTCGGAAGCCTTGGCAAACCAAGTAACAGAGGAGAGCTACAAAAAGGGCATGACTTACCCACCTTTCACTGATATCAGAAAAATTTCTGCCAACATAGCTGCAAATGTTGCCGCCAAGGCATATGAACTAGGCTTGGCTACACATCTTCCTCGTCCTGAGAATCTTGTCAAGTATGCTGAGAGTTGCATGTACACTCCCCTATACCGCAACTATAGGTGA 1779 0.4435 MENTLKPLRDGESVLDCLSPRSSVAGGVEDVYGEDRATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSSQQLQEKKLMHNIRQYEVPLQKYTAMMDLQERNERLFYKLLIDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNETLLNDEFYIGLRQKRATGKEYYDLLHEFMSAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPDHKFLFLGAGEAGTGIAELIALEISKQTKAPIEESRKQIWLVDSKGLIVSSRANSLQHFKKPWAHEHEPVSTLIEAVKVIKPTVLIGSSGVGKTFTKEVVEAMTANNKTPLILALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPIEYNGKTYYSGQSNNAYIFPGFGLGLVMSGAIRVHDDMLLAASEALANQVTEESYKKGMTYPPFTDIRKISANIAANVAAKAYELGLATHLPRPENLVKYAESCMYTPLYRNYR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00246 592 Pfam Malic enzyme, NAD binding domain 308 560 IPR012302 GO:0051287
Tsu02g00246 592 Gene3D - 306 592 - -
Tsu02g00246 592 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 308 591 IPR036291 -
Tsu02g00246 592 SMART Malic_M_2 308 561 IPR012302 GO:0051287
Tsu02g00246 592 PRINTS Malic enzyme signature 123 147 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 PRINTS Malic enzyme signature 304 320 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 PRINTS Malic enzyme signature 438 454 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 PRINTS Malic enzyme signature 183 212 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 PRINTS Malic enzyme signature 219 241 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 PRINTS Malic enzyme signature 335 351 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 PRINTS Malic enzyme signature 279 297 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 SMART malic_2 117 298 IPR012301 GO:0004471
Tsu02g00246 592 Pfam Malic enzyme, N-terminal domain 117 297 IPR012301 GO:0004471
Tsu02g00246 592 PIRSF ME 26 592 IPR001891 GO:0004470|GO:0004471
Tsu02g00246 592 PANTHER MALIC ENZYME 4 592 - -
Tsu02g00246 592 ProSitePatterns Malic enzymes signature. 304 320 IPR015884 GO:0004471
Tsu02g00246 592 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 30 307 IPR046346 -
Tsu02g00246 592 CDD NAD_bind_1_malic_enz 308 586 - -
Tsu02g00246 592 Gene3D - 51 305 IPR037062 GO:0004471
Tsu02g00246 592 PANTHER MALIC ENZYME-RELATED 4 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00246 Tsu-Chr2 2084021 2088265 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00246 K00029 - gmx:100782096 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00246 02 2084021 2088265 Tsu02g05422 02 62724287 62729701 ECH
Tsu02g00246 02 2084021 2088265 Tsu07g00422 07 3250404 3254487 ECH
Tsu02g00246 02 2084021 2088265 Tsu02g00246 02 2084021 2088265 ECH