Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04115 ATGGGAGAGGAAGAATTTATAGACAACGCTCCGCTGATTGATCACTATTCTTCTTCCGGCGATGTGTTAGTTGAAGAGCCTTTTAGAAGAACAGGTAATGTATGGAGCGCCGTGGCACATATAATAACAGGAGTGATAGGAGCAGGTGTATTGTCACTAGCATGGTCGGTGGCGCAACTAGGATGGATTGCAGGTCCTCTGATTATTCTACTCTTTGCAGCCACTACCTACATTTCAACCTACCTTCTTTCTGATTGCTACAGATTTCATGATCCTGAACAAGGGAGCATTAGGTGCTCCTCCTACATGGATGCTGTCAAGTTGCACCTAGGAGCAATAAGGGGAAAGGTGTGTGGAGTATTGGTGCATCTGAGCTTATATGGTGCTACATGTGCCTATGTCATTACATCTGCTACCAGCATTAGAGcaattttgaaatcaaattGTTACCACAAGGAAGGACATGAAGCGCCTTGTAAATATGGGGATGCCATGTATATGATGGTGTTTGGACTTGTTCAGGTCATAATGTCATTCATACCAGATTTCCACAACATGGTATTGCTTTCAGTTGTTGCAGCTATTATGTCTTTTACATACTCTTCTATTGGACTAGGACTTGGCATCACAAAAGTTATAGAAAATGGAAGAATTATGGGGAGTGTAACTGGAGTACCAGCTTCAAATATTGCAGACAAATTATGGTTAGTCTTTCAAGCACTTGGTGATATTGCCTTTGCTTATCCATACACTGTCATTCTCCTTGAGATACAGGACACTCTAGAGTCTCCTCCAGCAGAAAACAAGACAATGAAAAAGGCCTCCATGATTGCTATCTTGATTACAACATTCTTCTACCTATGTTGTGCATGCTTTGGATATGCAGCTTTTGGAAATCAAACTCCAGGAAACCTCTTGACAGGTTTTGGATTTTACGAGCCTTATTGGCTCATCGACTTTGCTAATGCTTGCATTGTTCTTCATTTAGTTGGAGGATATCAGATTTATAGTCAACCAATATATAGTGCTGCTGATAGATGGTGTTCAAGAAAATATCCGAACAGCGGTTTCGTGAATAATTTCTATCGATTGAAACTGCCTATGTTACCGGCTTTTCAGCTGAACATGTTGAGGATATGTTTTAGAACAGCTTATGTGATTTCAACAACTGGACTTGCAATAATGTTTCCTTACTTCAATCAAGTTTTAGGAGTGCTAGGAGCATTAGGCTTTTGGCCATTGACTATATATTTTCCAGTAGAGATGTACTTTGTGCAGAATAAAATTGAATCTTGGTCTACAGAATGGATTTTTCTTAGGATTTTTAGCTTTGTTTGCTTTTTGGTGACAGTATTGAGTCTTGTTGGATCAATTGAAGGAATCATAAGTGAGAAACTAAGCTAA 1404 0.3932 MGEEEFIDNAPLIDHYSSSGDVLVEEPFRRTGNVWSAVAHIITGVIGAGVLSLAWSVAQLGWIAGPLIILLFAATTYISTYLLSDCYRFHDPEQGSIRCSSYMDAVKLHLGAIRGKVCGVLVHLSLYGATCAYVITSATSIRAILKSNCYHKEGHEAPCKYGDAMYMMVFGLVQVIMSFIPDFHNMVLLSVVAAIMSFTYSSIGLGLGITKVIENGRIMGSVTGVPASNIADKLWLVFQALGDIAFAYPYTVILLEIQDTLESPPAENKTMKKASMIAILITTFFYLCCACFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQPIYSAADRWCSRKYPNSGFVNNFYRLKLPMLPAFQLNMLRICFRTAYVISTTGLAIMFPYFNQVLGVLGALGFWPLTIYFPVEMYFVQNKIESWSTEWIFLRIFSFVCFLVTVLSLVGSIEGIISEKLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04115 467 Pfam Transmembrane amino acid transporter protein 31 462 IPR013057 -
Tsu05g04115 467 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 7 466 - -
Tsu05g04115 467 PANTHER OS05G0424000 PROTEIN-RELATED 7 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04115 Tsu-Chr5 51828734 51832579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04115 29 449 Organic Solute Cotransporters AT1G77380 53.191 6.22e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04115 K24917 - gmx:100786621 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04115 05 51828734 51832579 Tsu05g04115 05 51828734 51832579 ECH
Tsu03g00996 03 9217285 9228987 Tsu05g04115 05 51828734 51832579 PCT
Tsu05g04115 05 51828734 51832579 Tsu03g00998 03 9243600 9246172 PCT