Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01470 ATGGCTGGGGCATTCAAAAAATGCATGATGCTGTGTTGTACAAGCAAGATTGTCTCGAAGGAAGACATGGCTGCAGAATCATACGAAGAAAACATCGCAACACTCACCAGACTTCTCCAggAGAAAGCTGAACTTGGTGGCATCGCCGCCGTTAAGATAAAGGAGCTGACGGCAGAGTTACAGGCGACCGGTTCAAAGCCGTTTAACCCGGATGAGAGGATCCGATCCGGTTTTGTTCATTTCAAGACAGAGAAATATGAGAAAAACCCTGATCTGTACGGTGAACTAGCCAAAGGCCAGAGCCCAAAGTTTATGGTTTTTGCTTGCTCAGACTCTAGAGTTTGTCCTTCCCACATTTTGGATTTCCAACCGGGTGAAGCTTTCGTGGTCAGAAACATCGCTAACATGGTTCCACCATATGACAAGACCAAGTATTCGGGAGCAGGGGCGGCCATTGAATATGCGGTCTTACATTTAAAGGTGGAGAATATTTTAGTTATTGGACACAGCTGCTGTGGAGGTATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACCGCAAGTGATTTCATAGAACAATGGGTCCAAATATGTAATCCAGCTAAGTCCAGGGTTAAAGCCGAAACAAGCAGCTTAAGCTTTTCAGAGCAGTGTACAAACTGTGAAAAGGAAGCTGTGAATGTATCACTTGGGAACTTATTGACTTATCCATTTGTGAGAGATGCGGTTGTGAAGAAAACACTTGCTTTGAAAGGAGCACATTACAATTTTGTTAATGGCACTTTTGAGCTGTGGGATTTGAATTTCAACATTTTGCCCTCTATATCCATTTAA 837 0.4373 MAGAFKKCMMLCCTSKIVSKEDMAAESYEENIATLTRLLQEKAELGGIAAVKIKELTAELQATGSKPFNPDERIRSGFVHFKTEKYEKNPDLYGELAKGQSPKFMVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDKTKYSGAGAAIEYAVLHLKVENILVIGHSCCGGIKGLMSIPDDGTTASDFIEQWVQICNPAKSRVKAETSSLSFSEQCTNCEKEAVNVSLGNLLTYPFVRDAVVKKTLALKGAHYNFVNGTFELWDLNFNILPSISI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01470 278 CDD beta_CA_cladeB 77 266 IPR045066 GO:0004089|GO:0008270
Tsu05g01470 278 SMART Pro_CA_2 97 267 IPR001765 GO:0004089|GO:0008270
Tsu05g01470 278 Coils Coil 25 45 - -
Tsu05g01470 278 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 153 173 IPR015892 GO:0004089|GO:0008270|GO:0015976
Tsu05g01470 278 SUPERFAMILY beta-carbonic anhydrase, cab 72 275 IPR036874 GO:0004089|GO:0008270
Tsu05g01470 278 PANTHER CARBONIC ANHYDRASE 23 278 - -
Tsu05g01470 278 Pfam Carbonic anhydrase 105 262 IPR001765 GO:0004089|GO:0008270
Tsu05g01470 278 Gene3D Carbonic anhydrase 63 278 IPR036874 GO:0004089|GO:0008270
Tsu05g01470 278 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 109 116 IPR015892 GO:0004089|GO:0008270|GO:0015976
Tsu05g01470 278 PANTHER CARBONIC ANHYDRASE 23 278 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01470 Tsu-Chr5 13977079 13989201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01470 K01673 - gmx:100810496 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01470 05 13977079 13989201 Tsu05g01470 05 13977079 13989201 ECH
Tsu05g01470 05 13977079 13989201 Tsu03g02227 03 24270245 24271917 ECH
Tsu05g01470 05 13977079 13989201 Tsu06g03752 06 49767267 49773296 ECH