Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00777 ATGTCAGGAGGACCTCCTTCAGCTTCTGGGAATGGTTCTTTTAAGCAGAAACTAAGGAGTTCTTTGTCAAGAAAAGGTAGGCGTAGTAGTAAGGTCATGTCTGTTGAAATCGAGGATGTTCACGATGCTGAGGAGTTGAAAGCGGTTGAAGAGTTTCGCCAAGCTCTTCTATCAGAAGACCTCCTCCCTGCAAAACATGATGACTATCATATGCTGCTTAGATTCCTTAAGGCTAGGAAATTTGAGATTGATAAATCAAAGCTGATGTGGTCTGATATGCTAAAATGGAGGAAAGAATTTGGTGCTGACAATATTGGGGAGGAATTTGAATTCAAGGAACTTGATGAAGTAATGCAATATTATCCACATGGACATCATGGAGTAGACAAAGACGGACGACCTGTGTACATAGAAAGATTAGGACAAGTCGATGCGACCAAGATGATGCAAGTCACAACCATGGATCGTTATATAAAATACCATGTAAAGGAGTTTGAGAGGACATTCGATGTAAAGTTTGCTGCTTGTTCTATTGCTGCCAAGAAGCACATCGATCAAAGTACGACTATCCTGGATGTGGAGGGAGTGGGGCTTAAAAGCTTCAGCAAACATGCTAGGGAACTTGTTACTCGCATTCAAAAGATCGACGGAGACAACTATCCAgagACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATATTGTGGAACACTGTAAAATCCTTCCTTGATCCAAAGACCACAGCAAAAATCAATGTTCTTGGCAACAAGTATGATACTAAGTTGCTTGAAATAATTGATGCAAGTGAGTTACCTGAGTTTTTAGGAGGTACATGTAAATGTCCTAATGAAGGAGGATGTATGCGTTCGGATAAGGGCCCGTGGAGTGATGCAGAAATAATGAGGATGGTTCAGAATGGTGCTCATAAATGTTCAAAAAAATCCGAGTCTCAGgttgaggaagaaaaaaaaaaggccgaggaagaagagaaagagaaaacaattCCTGAGGTGAGAAAGCTCAATCTAGAAACTCAAGTCCCTGCTACTAAAGCTTCTACGCAAGAAGAGGATGTAACCCCGGCGGTGGTTGAAAAAAAACCTTCTCAGAAAAAAGTCGAGGAAAAAAAAGTTGAGGATAAAAAAGTTGAGAGTGACGAAATGGCAACATCAAAAGAGTTTGTGACTGTCATGAAACGCATGGCTGAGTTGGAAAATAAAATGACGAACATTAATCATCAGCCTGCTTTAATGCCACCTGAGAAGGAGGAAATGCTAAATAATACTATCAGTCGAGCTGATTTATTGGAAAAAGAACTCCAGGCCACGAAGAAGGCTTTAGAGGATTCCCTGGCTAAACAAGACGAGATTTCGGCTTATGTTGAGAATAAAAAGCAGAATAAAAGAACGTGTTTTTGTTTATGGTAA 1440 0.3896 MSGGPPSASGNGSFKQKLRSSLSRKGRRSSKVMSVEIEDVHDAEELKAVEEFRQALLSEDLLPAKHDDYHMLLRFLKARKFEIDKSKLMWSDMLKWRKEFGADNIGEEFEFKELDEVMQYYPHGHHGVDKDGRPVYIERLGQVDATKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVEGVGLKSFSKHARELVTRIQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDTKLLEIIDASELPEFLGGTCKCPNEGGCMRSDKGPWSDAEIMRMVQNGAHKCSKKSESQVEEEKKKAEEEEKEKTIPEVRKLNLETQVPATKASTQEEDVTPAVVEKKPSQKKVEEKKVEDKKVESDEMATSKEFVTVMKRMAELENKMTNINHQPALMPPEKEEMLNNTISRADLLEKELQATKKALEDSLAKQDEISAYVENKKQNKRTCFCLW 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00777 479 MobiDBLite consensus disorder prediction 352 382 - -
Tsu05g00777 479 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 386 - -
Tsu05g00777 479 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 386 474 - -
Tsu05g00777 479 SUPERFAMILY CRAL/TRIO N-terminal domain 41 108 IPR036273 -
Tsu05g00777 479 SMART CRAL_TRIO_N_2 68 93 IPR011074 -
Tsu05g00777 479 Coils Coil 430 457 - -
Tsu05g00777 479 MobiDBLite consensus disorder prediction 364 382 - -
Tsu05g00777 479 PRINTS Cellular retinaldehyde-binding protein signature 71 93 - -
Tsu05g00777 479 PRINTS Cellular retinaldehyde-binding protein signature 240 259 - -
Tsu05g00777 479 PRINTS Cellular retinaldehyde-binding protein signature 273 282 - -
Tsu05g00777 479 MobiDBLite consensus disorder prediction 312 339 - -
Tsu05g00777 479 CDD SEC14 114 282 IPR001251 -
Tsu05g00777 479 Gene3D - 101 313 IPR036865 -
Tsu05g00777 479 MobiDBLite consensus disorder prediction 317 339 - -
Tsu05g00777 479 MobiDBLite consensus disorder prediction 1 19 - -
Tsu05g00777 479 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 15 386 - -
Tsu05g00777 479 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 386 474 - -
Tsu05g00777 479 MobiDBLite consensus disorder prediction 1 31 - -
Tsu05g00777 479 SUPERFAMILY CRAL/TRIO domain 113 309 IPR036865 -
Tsu05g00777 479 Pfam CRAL/TRIO domain 119 281 IPR001251 -
Tsu05g00777 479 Gene3D - 25 100 - -
Tsu05g00777 479 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 113 287 IPR001251 -
Tsu05g00777 479 SMART sec14_4 113 284 IPR001251 -
Tsu05g00777 479 Coils Coil 313 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00777 Tsu-Chr5 6561372 6565593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00777 72 278 Acyl Lipid Metabolism Gene Families AT5G47730 31.100 9.78e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00777 - - gmx:100796901 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00777 05 6561372 6565593 Tsu04g03447 04 43675221 43679952 ECH
Tsu05g00777 05 6561372 6565593 Tsu05g00777 05 6561372 6565593 ECH
Tsu02g02437 02 24852983 24856320 Tsu05g00777 05 6561372 6565593 ECH