Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03447 ATGTCTTTGTCTGGACCCGAATCTCCTAGGCCAGCTCTTGAAAAAATTGACCGCGTTGGATCTTTTAAGAAGAAACTTAGAAATTCCCTCACTAGGAGGAGTAGGCGAAGCAGTAGTAAGGTTATGTCGGTTGAAATTGAAGATGTCCGCAATGCTGATGATTTGAAAGCCGTTGATGAATTTCGTCAGGCTCTCGTGTTGGATGAATTGCTCCCTGAGAAGCATGATGACTATCATATGCTGCTCAGATTCCTTAGGGCAAGGAAATTTGACATTGAGAAATCAAAGCAAATGTGGTCTGACATGCTTAAATGGAGGAAGGAATTTGGTGCTGACACTATTGTTGAGGACTTTGAATTCAAGGAACTTGAGGAAGTAATGCAATATTATCCTCATGGACATCATGGAGTAGATAAGGAAGGAAGACCAATTTACATTGAGAGGCTGGGAGCAGTTGATGCCACCAAGTTGATGCAAGTCACAACCATGGATCGTTACATCAAATACCATGTCAAGGAGTTTGAGAGGACTTTTGATCTCAAATTTGCAGCTTGTTCCATTGCTGCAAAGAAGCACATTGATCAAAGTACCACCATTTTGGATGTGCAAGGAGTGGGGCTTAAGAACTTCAACAAACAAGCAAGAGACCTTATCACGAGCCTTCAGAAGATTGACGGTGACAATTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAGCACTGTTAAATCCTTCCTTGACCCAAAGACCACAGCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCAAGTGAGTTGCCAGAGTTTTTAGGAGGTACTTGTACCTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCATGGAAGGATCAAGACATTTATAGgATGGTTCAGAATGGCGAACACAGATGCTCAACGAAATCTGATGTTCCTATCGTGGAAGTGCAAACACCTAAGGTAAGCGAGGCTGCCAAAATCGAGGCAGTTTTCACTGCACAATTGTCTTGTGCACAAAGGAATCCTGTCCTTGCCAAGGTCCCTTCTGCAAAACCTAGCACCTACGATGAATTTGTCGTCCCTGTGCCTGTGACTGATAAAACCGTTTGGAAGAACGTGGAACCAAATGAGACATATGCAGTATCAAAAGCTGTAGCGGAAGCTTTCACGATGCCTGATTCGTACAAGTTTCACGGAAAAGTGAACTCACAGATTTTCACCGGTGTAATGGCTTTTGTGATGGGCATCGTAACAATGGTGAGGATGACACGAAACATGCCAAAGGTGCTCACTGATGCCAACTTCTACTCAAATTCTGTTTACACTAGTGAGGACTATAAAGCCGAAGTCCCTTCTGAACAAATGACTAACCCTACCATTTCTGCTCAAGAGTTTATGACTGTGATGAAACGTATGGCTGAGTTGGAAGCTAAAATGGGTAACATGAACGCACCAACTACTTGTATGCCACCTGAGAAGGAAGAAATGCTTAATGCTGCAATAAGTCGCGCTGATGCTCTTGAGCAAGAACTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTGCCAAGCAAGACGAGCTTTCGGCTTAcattgagaaaaagaaaaataagaagaagaagtcATTGTTTGCATGGCCAGCATGA 1704 0.4249 MSLSGPESPRPALEKIDRVGSFKKKLRNSLTRRSRRSSSKVMSVEIEDVRNADDLKAVDEFRQALVLDELLPEKHDDYHMLLRFLRARKFDIEKSKQMWSDMLKWRKEFGADTIVEDFEFKELEEVMQYYPHGHHGVDKEGRPIYIERLGAVDATKLMQVTTMDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKQARDLITSLQKIDGDNYPETLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDQDIYRMVQNGEHRCSTKSDVPIVEVQTPKVSEAAKIEAVFTAQLSCAQRNPVLAKVPSAKPSTYDEFVVPVPVTDKTVWKNVEPNETYAVSKAVAEAFTMPDSYKFHGKVNSQIFTGVMAFVMGIVTMVRMTRNMPKVLTDANFYSNSVYTSEDYKAEVPSEQMTNPTISAQEFMTVMKRMAELEAKMGNMNAPTTCMPPEKEEMLNAAISRADALEQELMATKKALEDSLAKQDELSAYIEKKKNKKKKSLFAWPA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03447 567 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 4 560 - -
Tsu04g03447 567 CDD SEC14 123 291 IPR001251 -
Tsu04g03447 567 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 4 560 - -
Tsu04g03447 567 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 122 296 IPR001251 -
Tsu04g03447 567 Coils Coil 516 543 - -
Tsu04g03447 567 SMART CRAL_TRIO_N_2 77 102 IPR011074 -
Tsu04g03447 567 SUPERFAMILY CRAL/TRIO domain 122 318 IPR036865 -
Tsu04g03447 567 Gene3D - 29 109 - -
Tsu04g03447 567 SMART sec14_4 122 293 IPR001251 -
Tsu04g03447 567 PRINTS Cellular retinaldehyde-binding protein signature 249 268 - -
Tsu04g03447 567 PRINTS Cellular retinaldehyde-binding protein signature 282 291 - -
Tsu04g03447 567 PRINTS Cellular retinaldehyde-binding protein signature 80 102 - -
Tsu04g03447 567 Pfam CRAL/TRIO domain 128 290 IPR001251 -
Tsu04g03447 567 SUPERFAMILY CRAL/TRIO N-terminal domain 52 118 IPR036273 -
Tsu04g03447 567 Gene3D - 110 321 IPR036865 -
Tsu04g03447 567 Pfam CRAL/TRIO, N-terminal domain 73 101 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03447 Tsu-Chr4 43675221 43679952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03447 56 287 Acyl Lipid Metabolism Gene Families AT5G47730 27.386 8.51e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03447 - - gmx:100785716 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00777 05 6561372 6565593 Tsu04g03447 04 43675221 43679952 ECH
Tsu04g03447 04 43675221 43679952 Tsu04g03447 04 43675221 43679952 ECH
Tsu02g02437 02 24852983 24856320 Tsu04g03447 04 43675221 43679952 ECH