Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02437 ATGTCTGCACCTATTAATATTGATCAACCTGTTAAAGCAGGTCTTGAGACTGAATATGTGGAGGATGAAAAGAAAACGAAGCTTGGATCCTTAAAGAAGGTAGCAATAAATGCATCTTCTAAGTTCAAAAATTCCATAAAGAAGGGGCGAAGACACAACAGGGTTACATCTATTATCGAGGATGAACTCGATACAGAAGAGTTGCTGGCACTTGAAGCTTTTCGCCAAGCACTTACTCTCGAAGAGCTATTACCCTCAAAACACGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTATGACATTGAGAAAACAAAGCAAATGTGGGAAGATATGCTCCAATGGAGGAAAGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCAATGAGATAGATGAAGTTCTGAAATACTATCCTCAAGGAACACATGGAGTTGATAAAGATGGAAGACCTGTTTATATCGAAAGGTTGGGTTTGGTCGATTCAAACAAGCTGATGCAAGTAACAAATATGGACCGATATCTTAAGTACCACGTAAGAGAGTTCGAGAAGACGTTCAATGTTAAGATGCCCGCTTGTTCGATTGCAGCAAAGAAGCACATTGATCAAAGCACAACTATCTTGGATGTGCAGGGATTGGGTCTCAGAAGTATGAACAAAGCTGCAAGAGATCTCCTCCAGAGGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCTTTGAACCGTATGTTCATCATCAATGCCGGTTCTGGATTTAGGATGTTGTGGAACACTGTTAAGTCCTTCCTTGATCCCAAAACCACCTCAAAAATCCATGTCCTAGGTAACAAATATCAAAGCAAGTTGCTTGAAATCATCGATGCCAGTGAACTTCCGGATTTCTTGGGGGGTACTTGTACTTGTGCAGACAAAGGTGGTTGCATGCTTTCTGACAAGGGACCATGGAACGACCCCGAAATCTTGAAGATACTTCAAAATGGTGAAGTAAAACGCAGAAGGAAAACAAATATCAAAGATGAAACGTGTCGAAAGGAATGTGATTCTTTCAACCAAGAAGCTGCTCTCGAGGAGGCATGCCACGCTATAGCAGAAGCCGCAAAACAATGTAATAATGTAtatcaatttgaaaaattggcTTCAATGAAAGACAAACCAACTTCTTGGAAGGAAGCAATACAAAATGATCAAAAGGGACTTTCTAAAGGTTGCTATGATAACAATGTGTGCAGGACTTCGAATGGATTTAGAAACCAATTTGCCGGTGGACTAATGTccattttttttggaataataaCGTTAATCCGCTTGACACGGTACGTTCCAAAGAAAATGACTACAGATATGTATGGTAACTCAGTATGTTATGATGACAATATGATGAAAGAAGCACCTGGCATTTCCTTTGATGATCACATGACTACGATGAAGCGCATGGCCGATCTAGAAGAGAAAGTGAACACCCTCATGATGAGACCTTCCATACCACCTGAAATGGAAGAATTACTCAACAGTGCTCTAAACCGTGTCGAAATGCTCGAGCAAGAGTTGGCTACATCTAAGAagGCACTTGACGACGCCCTTGTCAAGCAAGTGGAGCTTCAATCACAActtgacaaaaagaaaaagaagaagttgTTCCGCTGGTAA 1665 0.3946 MSAPINIDQPVKAGLETEYVEDEKKTKLGSLKKVAINASSKFKNSIKKGRRHNRVTSIIEDELDTEELLALEAFRQALTLEELLPSKHDDHHMMLRFLRARKYDIEKTKQMWEDMLQWRKEFGADTIMEDFEFNEIDEVLKYYPQGTHGVDKDGRPVYIERLGLVDSNKLMQVTNMDRYLKYHVREFEKTFNVKMPACSIAAKKHIDQSTTILDVQGLGLRSMNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRMLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPDFLGGTCTCADKGGCMLSDKGPWNDPEILKILQNGEVKRRRKTNIKDETCRKECDSFNQEAALEEACHAIAEAAKQCNNVYQFEKLASMKDKPTSWKEAIQNDQKGLSKGCYDNNVCRTSNGFRNQFAGGLMSIFFGIITLIRLTRYVPKKMTTDMYGNSVCYDDNMMKEAPGISFDDHMTTMKRMADLEEKVNTLMMRPSIPPEMEELLNSALNRVEMLEQELATSKKALDDALVKQVELQSQLDKKKKKKLFRW 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02437 554 Gene3D - 123 334 IPR036865 -
Tsu02g02437 554 SUPERFAMILY CRAL/TRIO N-terminal domain 61 131 IPR036273 -
Tsu02g02437 554 SMART CRAL_TRIO_N_2 90 115 IPR011074 -
Tsu02g02437 554 SMART sec14_4 135 306 IPR001251 -
Tsu02g02437 554 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 551 - -
Tsu02g02437 554 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 135 309 IPR001251 -
Tsu02g02437 554 Coils Coil 508 549 - -
Tsu02g02437 554 Pfam CRAL/TRIO domain 141 303 IPR001251 -
Tsu02g02437 554 Pfam CRAL/TRIO, N-terminal domain 78 114 IPR011074 -
Tsu02g02437 554 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 551 - -
Tsu02g02437 554 Gene3D - 29 122 - -
Tsu02g02437 554 CDD SEC14 136 304 IPR001251 -
Tsu02g02437 554 PRINTS Cellular retinaldehyde-binding protein signature 262 281 - -
Tsu02g02437 554 PRINTS Cellular retinaldehyde-binding protein signature 295 304 - -
Tsu02g02437 554 PRINTS Cellular retinaldehyde-binding protein signature 93 115 - -
Tsu02g02437 554 SUPERFAMILY CRAL/TRIO domain 135 330 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02437 Tsu-Chr2 24852983 24856320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02437 96 300 Acyl Lipid Metabolism Gene Families AT5G47730 29.469 9.78e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02437 - - lja:Lj3g3v3363570.1 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02437 02 24852983 24856320 Tsu02g02437 02 24852983 24856320 ECH
Tsu02g02437 02 24852983 24856320 Tsu05g00777 05 6561372 6565593 ECH
Tsu02g02437 02 24852983 24856320 Tsu04g03447 04 43675221 43679952 ECH