Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01907 atgtcttcttcttcttctcttcagtTCCAAAGATTCAATCCTACAACCGATGCAACAGCCATAGCCAACGGTGTAAACTGTCCTAGACAACCACAAACACAACCACTGATGACGGCGGCGCGTCGTTTTATAATACCATTTCCGGTATCTCTTTCTTCAAACGACAGCTTAGCACTTCACCACGCGCATATGGTGGGACACAACCAGTGTTGCTCCGTCGTAACACAAACCATCACCGCCCCTGTCTCCGCCGTATGGTCAGTTGTTCGACGGTTCGAAAATCCACAAGGATACAAAAACTTCATCAAAAGTTGCCACGTCATCACTGGTGAAAATATTAACGTCGGCAGCGTACGTGAGGTTCGTGTGGTTTCCGGACTACCAGCTGAGTCGAGTACAGAAAGGCTGGAGATTCTTGACGATGAACGCCACGTCATCAGTTTCAGTGTTGTCGGTGGGGACCACCGTTTGAGAAACTATAGGTCGGTGACGACACTTCATTCTGTCGACGGAAATAGGACACTTGTCATCGAATCATACGTCGTTGATATACCGCAAGATAATTTTGAGTTTGCTTCGGGACTTAGAGTTAATTCTTCTAAGAACAGTATCATGGGTGTTAATGTGGGGGCGAACCACCAAAAAGAAGCAACATTGCAGCCTCTCTTGGATAGCTTCGTCAAGCGGTTGGGAGTTTGGAGGAACAAATATATGAGTTTTTCGAGGTAG 729 0.4527 MSSSSSLQFQRFNPTTDATAIANGVNCPRQPQTQPLMTAARRFIIPFPVSLSSNDSLALHHAHMVGHNQCCSVVTQTITAPVSAVWSVVRRFENPQGYKNFIKSCHVITGENINVGSVREVRVVSGLPAESSTERLEILDDERHVISFSVVGGDHRLRNYRSVTTLHSVDGNRTLVIESYVVDIPQDNFEFASGLRVNSSKNSIMGVNVGANHQKEATLQPLLDSFVKRLGVWRNKYMSFSR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01907 242 Gene3D - 49 193 IPR023393 -
Tsu03g01907 242 Pfam Polyketide cyclase / dehydrase and lipid transport 70 189 IPR019587 -
Tsu03g01907 242 CDD PYR_PYL_RCAR_like 70 192 - -
Tsu03g01907 242 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORTER 35 188 - -
Tsu03g01907 242 SUPERFAMILY Bet v1-like 69 189 - -
Tsu03g01907 242 PANTHER - 35 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01907 Tsu-Chr3 19743750 19746848 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01907 K14496 - gmx:100808416 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01907 03 19743750 19746848 Tsu05g03378 05 45133252 45134635 ECH
Tsu06g00334 06 2781001 2781935 Tsu03g01907 03 19743750 19746848 ECH
Tsu03g01907 03 19743750 19746848 Tsu03g01907 03 19743750 19746848 ECH
Tsu03g01907 03 19743750 19746848 Tsu05g03378 05 45133252 45134635 PCT