Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05342 ATGTTTTCAGGAGCGACAGGAATCCTTAACAGGGGCCACAAACTAAGAGGGAAAGTGGTGTTGATGCGTAAAAATGTGTTGGATTTCAACACAATTGTGAGTATTGGTGGTGGAAACATCCATGGAGTCATTGACACTGGCATCAATCTCATTGGTTCATCTGTTGATGGCCTCACTGCCTTCTTAGGCCGCAGTGTCTCCCTTCAACTCATTAGTGCTACCAAAGCTGATGcAAATGGAAAAGGAAAAGTTGGAAAGGATACATTTTTGGAAGGTATTATTGCCTCATTACCAACTTTGGGAGCTGGTGAATCTGCATTCAATATTCATTTTGAATGGGATGATGAGTTGGGAATTCCAGGTGCATTTTACATCAAGAATTATATGCAAGTTGAGTTTTACCTCAAGAGTCTAACTCTTGAAGATGTTCCTAATCATGGAACCATCCATTTTGTGTGCAACTCTTGGGTTTATAACTCAAAACTCTACAAAAGTCCGCGCATTTTCTTTGCCAACAAGACATATCTTCCGAGTGAAACACCATCTCCACTTGTCAAGTATAGAGAAGAAGAATTGCAAATTCTAAGGGGAGATGGAACAGGAGAGCGCAAGTTACATGAAAGGATCTACGATTATGATGTCTATAATGATTTAGGCAATCCGGATCATGGTGATAATCTTGCTCGCCCTGTTCTTGGAGGGTCTAGCACACATCCATATCCTCGTAGGGGAAGGACAGGTCGATATCCAACAAGGAAAGATCCAAATAGTGAGAAACCAGCTACAGAAATATATGTTCCAAGAGATGAAAATTTTGGCCACTTGAAGTCCTCAGACTTTCTTACATATGGAATAAAATCTGTATCTCAAATTGTATTACCTGCATTCGAATCTGCGTTTGATTTGAACTTTACGCCGAACGAGTTTGATAGTTTCCAAGATGTGCGTGACCTCTTTGAAGGTGGAATTAAGCTGCCTCTAGATGTAATCAGCACAATTAGCCCCTTACCTGTGATCAAAGAACTCTTTCGTACCGATGGTGAAAATGTTCTCAAGTTTCCACCACCTCATGTTGTTCAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCTTGCATGATTCGCGGTCTTCAAGAGTTTCCTCCTAAAAGCAATCTTGATCCCACAGTCTATGGTGATCAAACTAGCAAGATAACTGCAGATACCTTGAATCTTGATGGGAGCACAGTAGATGAGGCACTTGCAAGTGGGAGGTTATTTGTATTAGATTACCATGATACATTTATCCCATTTTTACGACGAATAAACGAGACTTCTGCAAAGGCTTATGCTACTAGAACAATCCTTTTTCTAAAAGAAGATGGAACTTTAAAGCCAGTAGCCATTGAATTAAGTTTGCCACATCCTGATGGTGACAAATCAGGTGCCATTAGTCAAGTCATCTTACCTGCAAATGAAGGTGTTGAAAGTACTATTTGGCTATTAGCAAAAGCTTATGTTGTTGTTAATGATTCTTGCTATCATCAACTCATGAGTCATTgGTTGAATACTCATGCAGTAATTGAGCCATTCGTTATAGCAACAAATCGACATCTTAGTGTGCTTCATCCGATTAATAAACTTTTAGCTCCCCATTATCGTGACACCATGAACATCAATGCACTTGCAAGAGAATCTCTAATCAATGCCGATGGCATAATAGAGAAAACTTTTTTGCCTTCAAAGTATGCTGTGGAAATGTCTTCAGCAGTGTACAAGAATTGGGTTTTCCCTGATCAAGCCCTGcctgctgatcttatcaagagaaATATGGCAGTTAAGGATCCTTCGTCCCCGTACGGACTTCGTCTTCTGATAGAGGATTACCCTTATGCTGTCGATGGATTGGAGATATGGACAACTATTAAAACATGGGTGCAAGATTATGTCTCACTGTATTATGCAACAGACAATGATATCAAAAATGATTCTGAGCTTCAACATTGGTGGAAAGAAGTGGTAGAGAAAGGTCACGGTGATTTGAAAGATAAGCCATGGTGGCCTAAGTTGAACACACTTGAAGAGCTTATTGAAGTCTGCACTATCATCATATGGACGGCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAGTATCCTTACGGCGGTTTTATTCTAAACCGCCCAACTCTCAGTAGAAGATTGCTTCCCGAGAAAGGAAGTGCGCAATATGATGAACTGGTGAAGAGTCCTCAAAAGGCTTACTTGAGAACGATTACGCCAAAGTTTCAGACTCTTATTGACCTTTCCGTGATAGAGATATTGTCAAGACATGCTTCTGATGAAGTCTACCTTGGACAAAGGGATAATCCACATTGGACCTCTGATTCAAAAGCATTGCAAGCATTTCAAAAGTTTGGTAATAAGCTAGCAGAAATCGAGGCAAAACTCACAAAGAAGAACAATGATCCGAGTCTAAACCATCGAGTTGGACCGGTTCAGTTGCCATATACTTTGCTTCATCCCACCAGTGAGGAGGGGTTGACCTTTAGAGGAATTCCCAATAGCATCTCTATCTAA 2592 0.4016 MFSGATGILNRGHKLRGKVVLMRKNVLDFNTIVSIGGGNIHGVIDTGINLIGSSVDGLTAFLGRSVSLQLISATKADANGKGKVGKDTFLEGIIASLPTLGAGESAFNIHFEWDDELGIPGAFYIKNYMQVEFYLKSLTLEDVPNHGTIHFVCNSWVYNSKLYKSPRIFFANKTYLPSETPSPLVKYREEELQILRGDGTGERKLHERIYDYDVYNDLGNPDHGDNLARPVLGGSSTHPYPRRGRTGRYPTRKDPNSEKPATEIYVPRDENFGHLKSSDFLTYGIKSVSQIVLPAFESAFDLNFTPNEFDSFQDVRDLFEGGIKLPLDVISTISPLPVIKELFRTDGENVLKFPPPHVVQVSKSAWMTDEEFAREMLAGVNPCMIRGLQEFPPKSNLDPTVYGDQTSKITADTLNLDGSTVDEALASGRLFVLDYHDTFIPFLRRINETSAKAYATRTILFLKEDGTLKPVAIELSLPHPDGDKSGAISQVILPANEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATNRHLSVLHPINKLLAPHYRDTMNINALARESLINADGIIEKTFLPSKYAVEMSSAVYKNWVFPDQALPADLIKRNMAVKDPSSPYGLRLLIEDYPYAVDGLEIWTTIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLNTLEELIEVCTIIIWTASALHAAVNFGQYPYGGFILNRPTLSRRLLPEKGSAQYDELVKSPQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLAEIEAKLTKKNNDPSLNHRVGPVQLPYTLLHPTSEEGLTFRGIPNSISI 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05342 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 863 IPR013819 GO:0016702|GO:0046872
Tsu02g05342 863 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 863 - -
Tsu02g05342 863 PRINTS Lipoxygenase signature 539 559 IPR013819 GO:0016702|GO:0046872
Tsu02g05342 863 PRINTS Lipoxygenase signature 501 518 IPR013819 GO:0016702|GO:0046872
Tsu02g05342 863 PRINTS Lipoxygenase signature 519 536 IPR013819 GO:0016702|GO:0046872
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Tsu02g05342 863 PRINTS Plant lipoxygenase signature 776 790 IPR001246 GO:0016491
Tsu02g05342 863 ProSiteProfiles PLAT domain profile. 44 171 IPR001024 GO:0005515
Tsu02g05342 863 SMART LH2_4 13 172 IPR001024 GO:0005515
Tsu02g05342 863 SUPERFAMILY Lipoxigenase 176 863 IPR036226 -
Tsu02g05342 863 Gene3D - 276 364 IPR027433 -
Tsu02g05342 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 175 IPR036392 GO:0005515
Tsu02g05342 863 MobiDBLite consensus disorder prediction 227 260 - -
Tsu02g05342 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 519 533 IPR020833 GO:0016702|GO:0046872
Tsu02g05342 863 Gene3D - 176 275 - -
Tsu02g05342 863 Gene3D PLAT/LH2 domain 5 175 - -
Tsu02g05342 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 546 556 IPR020834 GO:0016702|GO:0046872
Tsu02g05342 863 Gene3D - 365 496 - -
Tsu02g05342 863 Gene3D - 497 862 - -
Tsu02g05342 863 PANTHER LIPOXYGENASE 1 863 IPR000907 GO:0016702|GO:0046872
Tsu02g05342 863 CDD PLAT_LH2 13 172 IPR042057 -
Tsu02g05342 863 Pfam PLAT/LH2 domain 73 170 IPR001024 GO:0005515
Tsu02g05342 863 Pfam Lipoxygenase 184 846 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05342 Tsu-Chr2 62011494 62015137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05342 14 863 Acyl Lipid Metabolism Gene Families AT1G55020 58.449 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05342 K15718 - gmx:547774 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05342 02 62011494 62015137 Tsu08g00548 08 6007205 6012743 PCT
Tsu08g00538 08 5770746 5776881 Tsu02g05342 02 62011494 62015137 PCT