Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00538 ATGACTTCATTGGAGACAGATATCATCGACAATGGCAAAAAGCTGATCAAAGGAACTGTGGTTTTGAGGCAAAAGAACTTAAATGTTGTTGGTGATGCGGTTCCTCCTTCCATCTTGGACACTTCTTCTGTAGCTCTCAAGTTGATTAGTGCATCCAAACATGATGGAAGTGGTAAAGGGAAAATCGGAAAGCAAACATTTTTGGAAGGCAAAAACTCTCCTTTCGATGTTGAATTTGAATGGGACCGTCATTCCATGGGAAATCCAGGAGCTTTTTATATCGAAAATTTCTTGCAACATGAATTCTTTCTTGTGAGCTTAACCCTTGAAGATGATCTTCACCATGAAACCATCAACTTTGTTTGCAATTCATGGATTTATAATACTGAAAAGTACACAACTGACCGGATCTTCTTTGCCAACAAGGCATACCTTCCAAGTGAAACACCGGCTCCATTAGTGTATTACAGACAAGAAGAATTGGAGAGTTTAAGAGGAGATGGAACTGGAGAACGTAAAGAATGGGAAAGAATATATGATTATGACGTTTACAATGATTTGGGGCAGCCGGATAAAAATGATTCCTTGGCACGTCCAACTCTTGGAGGATCAAACACATTGCCTTATCCTCGAAGGGGAAGAACTGGCAGAAAGCCAACTCTAAAAGATCCAGAGGCTGAAAGTCGGAGTAAATTTGTTTACATTCCAAGAGATGAATCACTTAATCCGTTGAAAGCATCACATTCTGTTATTAAAACACTCAATTTAGTATCTCAAAATGACACACCTCGATTAAGAGCTCTAGTTACATTAGAAAATGATGAACAACCAGAGTTTAACACCTTTGAAGACGTGCTCTTGCTTTTCAATGGAGAACCACCAAATGATTTTCCAATACCAAAAGTGATTCAAGCAAGTTATACGGCATGGATGAGTGATGAGGAATTTTCAAGAGAGATGATTGCTGGTGTGAATCCAAACGTCATTAAAAAACTTTCGGAATTTCCACCAAAAAGTAAGGTAGATAGCCAACTCTATGGTGATAATACCACCACAATAACCAAGGAACACTTGGAGCCATACATGGATGGGATCAATATAGAACAGGTTATCCAAAGCAATAGACTCTACATACTTGATCACCACGATGCAATCTTTCCATATTTGAGGAAACTAAATGAAACTGGTGCAAAGGCCTATGCTTCAAGGACCATTCTCTTTTTGCAAGATGATGGAACTTTGAAGCCATTGGCCATTGAGCTAAGTAAGCCACATCCTCAAGGTGATAGTTTTGGTCCTGTTAGTAATGTTTACTTTCCTGCAAGTGAAGGTGTTGAAGCTTCAATTTGGCTCCTTGCCAAGGCTTATGTTCTAGTAAATGATGCAAATTATCACCAACTTGTTAGCCATTGGTTGAACACTCATGCTACTGTTGAACCATTCATCATAGCAACTAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTATTACTTCCACATTATCGTAACACGATGAACATAAATGCCAATGCACGAAATATCTTGATCAACGCAGACGGCATTGTAGAATCAACATTCTTATTGGGAGGTTATTCAATGCAATTGTCTGCTGATGCTTACAAGGATTGGAATTTCACTGAGCAAGGACTACCTAATGATCTAATCAAAAGAGGAGTGGCTGTTGAGGACCCAGCTTCACCACACGGCATTCGTCTGTTGATAGAGGATTATCCTTATGCTTCTGATGGACTAGAGATATGGGCTGCTATTAAGTTATGGGTTGAAGAATATGTGAATTTCTATTACAAGTCAGATGCAGCTATTGTACAAGATATTGAACTTCAAGCATTCTGGAAAGAAGTTGTAGAAGTGGGCCATGGTGACTTGAAGAGTGCTACATGGTGGTTTAAGATGCAAACTCGTACAGAGTTGATTAAAGCTTGCACCATCCTCATATGGATTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAATATCCATATGGAGGGTACATCGTGAGCCGACCAACTAAAACCAGAAGATTCATACCTGAGAAAGGATCCTTTGAGTATGACGAGCTTGCTAACGACTACCAAAAGACGTATTTGAGAACAATCACTCCAAAGAATGATACCCTTCAAAACATGGCCACTATGGAGGCATTGTCAAATCATGTTTCTGATGAGCAATACCTTGGACATAGAATTGAAGGTAATCTTTGGACTTCTGATTCAGAGCCAGTAGAGGCTTACAAGAAGTTTGGAAGGAAGttgattgaaattgaagaaaaactCGTTCAAAGAAACAATGACGAGTCATTGAGAAACCGGTATGGGCCGGTGAAGATGCCATACACACTGCTCCATCCATCCAGTGAAGAAGGAATGACTTTTAGAGGCATTCCCAACAGTATCTCCATCTAG 2433 0.395 MTSLETDIIDNGKKLIKGTVVLRQKNLNVVGDAVPPSILDTSSVALKLISASKHDGSGKGKIGKQTFLEGKNSPFDVEFEWDRHSMGNPGAFYIENFLQHEFFLVSLTLEDDLHHETINFVCNSWIYNTEKYTTDRIFFANKAYLPSETPAPLVYYRQEELESLRGDGTGERKEWERIYDYDVYNDLGQPDKNDSLARPTLGGSNTLPYPRRGRTGRKPTLKDPEAESRSKFVYIPRDESLNPLKASHSVIKTLNLVSQNDTPRLRALVTLENDEQPEFNTFEDVLLLFNGEPPNDFPIPKVIQASYTAWMSDEEFSREMIAGVNPNVIKKLSEFPPKSKVDSQLYGDNTTTITKEHLEPYMDGINIEQVIQSNRLYILDHHDAIFPYLRKLNETGAKAYASRTILFLQDDGTLKPLAIELSKPHPQGDSFGPVSNVYFPASEGVEASIWLLAKAYVLVNDANYHQLVSHWLNTHATVEPFIIATNRHLSVVHPIHKLLLPHYRNTMNINANARNILINADGIVESTFLLGGYSMQLSADAYKDWNFTEQGLPNDLIKRGVAVEDPASPHGIRLLIEDYPYASDGLEIWAAIKLWVEEYVNFYYKSDAAIVQDIELQAFWKEVVEVGHGDLKSATWWFKMQTRTELIKACTILIWIASALHAAVNFGQYPYGGYIVSRPTKTRRFIPEKGSFEYDELANDYQKTYLRTITPKNDTLQNMATMEALSNHVSDEQYLGHRIEGNLWTSDSEPVEAYKKFGRKLIEIEEKLVQRNNDESLRNRYGPVKMPYTLLHPSSEEGMTFRGIPNSISI 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00538 810 MobiDBLite consensus disorder prediction 190 229 - -
Tsu08g00538 810 Pfam Lipoxygenase 153 291 IPR013819 GO:0016702|GO:0046872
Tsu08g00538 810 Pfam Lipoxygenase 296 793 IPR013819 GO:0016702|GO:0046872
Tsu08g00538 810 Gene3D - 290 326 IPR027433 -
Tsu08g00538 810 Gene3D - 462 808 - -
Tsu08g00538 810 ProSiteProfiles PLAT domain profile. 23 140 IPR001024 GO:0005515
Tsu08g00538 810 Gene3D - 327 461 - -
Tsu08g00538 810 PANTHER LIPOXYGENASE 296 810 IPR000907 GO:0016702|GO:0046872
Tsu08g00538 810 PANTHER LIPOXYGENASE 24 291 IPR000907 GO:0016702|GO:0046872
Tsu08g00538 810 ProSitePatterns Lipoxygenases iron-binding region signature 1. 465 479 IPR020833 GO:0016702|GO:0046872
Tsu08g00538 810 Gene3D PLAT/LH2 domain 17 162 - -
Tsu08g00538 810 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 296 810 - -
Tsu08g00538 810 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 24 291 - -
Tsu08g00538 810 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 16 144 IPR036392 GO:0005515
Tsu08g00538 810 PRINTS Plant lipoxygenase signature 110 128 IPR001246 GO:0016491
Tsu08g00538 810 PRINTS Plant lipoxygenase signature 136 157 IPR001246 GO:0016491
Tsu08g00538 810 PRINTS Plant lipoxygenase signature 175 191 IPR001246 GO:0016491
Tsu08g00538 810 PRINTS Plant lipoxygenase signature 208 227 IPR001246 GO:0016491
Tsu08g00538 810 PRINTS Plant lipoxygenase signature 400 424 IPR001246 GO:0016491
Tsu08g00538 810 PRINTS Plant lipoxygenase signature 722 736 IPR001246 GO:0016491
Tsu08g00538 810 SUPERFAMILY Lipoxigenase 145 810 IPR036226 -
Tsu08g00538 810 PRINTS Lipoxygenase signature 447 464 IPR013819 GO:0016702|GO:0046872
Tsu08g00538 810 PRINTS Lipoxygenase signature 465 482 IPR013819 GO:0016702|GO:0046872
Tsu08g00538 810 PRINTS Lipoxygenase signature 485 505 IPR013819 GO:0016702|GO:0046872
Tsu08g00538 810 SMART LH2_4 14 141 IPR001024 GO:0005515
Tsu08g00538 810 ProSitePatterns Lipoxygenases iron-binding region signature 2. 492 502 IPR020834 GO:0016702|GO:0046872
Tsu08g00538 810 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 143 810 IPR013819 GO:0016702|GO:0046872
Tsu08g00538 810 Gene3D - 163 261 - -
Tsu08g00538 810 Pfam PLAT/LH2 domain 60 139 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00538 Tsu-Chr8 5770746 5776881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00538 4 810 Acyl Lipid Metabolism Gene Families AT3G22400 50.230 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00538 K15718 - gmx:100816880 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00538 08 5770746 5776881 Tsu02g05342 02 62011494 62015137 PCT