Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00548 ATGTTAGGAATCTTTGACAAGGGCCAAAAAATCAAGGGGACTGTGGTGTTGATGCCCAAAAATGTTTTGGACTTCAACGCCATAACAAACATCGGTAAAGGCGGTATTCTCGACACGGCCGGAAGTCTCATTGGCACAGTTACAAACGTTGTTGGTCAAGCTGTTGACACTGCAACTGCCTTCTTAGGCCGTAATGTCTCTATGCAGTTGATTAGTGCTACCAAGACTGATGtaaGTGGAAAGGGTTTAGTTGGAAAGGAAACATTTTTGAGCAAACATCTTCCTCAATTACCAACATTGGGAGCAAGACAAGATGCATTCAGTATTTTCTTTGAATATGATGCTAATTTTGGAATCCCAGGAGCATTTTACATAAGAAATTACACACAAGCTGAATTCTTCCTTGTTAGTGTGACTCTTGATGACATTCCTAACCGTGGAAGTGTTCAATTTGTTTGTAACTCATGGGTTTACAACTTCAAAAGCTACAAAAAGGATCGCATCTTTTTCACCAATGATACTTATCTTCCAAGTCAAACACCGGCTCCATTAAATTACTTTAGAAAAGAAGAATTGGAAAATCTAAGAGGAGATGGAACTGGAGAACGCAAAGAATGGGACAGGATATATGATTATgatatttataatgatttggGAAATCCAGATGGTGGTGACAAACTTGTTCGTCCGGTTCTTGGAGGGTCTAGCGAGTATCCCTATCCTCGTAGGGTTAGAAGTGGTAGAAAACCAACCAGAAAAGATCCTAAGAGTGAGAAACCTGGTGTCATTTATGTTCCAAGAGATGAAAATTTTGGTCATTTGAAATCATCAGATTTTCTTATGTATGGAATAAAATCATTGTCTCAAGATGTCTTGCCTCTGTTTCAAGCTGTAATTTTTGATCTAAATTTCACGCCGAATGAGTTCGATAGCTTCGATGAAGTGCGCGGACTTTTTGAAGGTGGAATTAAGCTTCCTACTGATATACTTAGCCAAATTAGCCCCCTTCCGGCCCTTAAGGAAATCCTCCGTACCGATGGTGAACAAGTCCTCAAGTTTCCACCACCTCAAGTAATTAGAGCAGTTAGCAAGTCCGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGGTTGCCGGTGTAAATCCTTGTGTGATTCGCCTTCTCCAAGAGTTTCCACCAAAAAGCACGCTAAACACCACCGTCTATGGTGATCAAACTAGTACAATAACAAAAGAACACTTAGAGTCTAACCTCGGCGAGCTCACCGTAGAAGAGGCACTTGATGGAAAGAGATTATTCATCTTAGATTACCATGATGCATTCATGCCTTATTTGGAAAGGATAAACTTAAATGCAAAAGCTTATGCTACAAGGACAATCTTGTTCTTGAAAGATGATGGGACTTTGAAGCCAATTGCCATTGAATTAAGTTTGCCACACCCAAATGGGGTCCAATATGGTTCTGAAAGCAAAGTATACTTGCCCGCAGACGAAGGTGCTGAAAGTATAATTTGGCTATTGGCAAAGGCTCATGTAATTGTAAATGACTCCTGCTATCATCAACTTATGAGCCATTGGTTGAATACACATGCAGTGGTTGAACCATTCATCATAGCAACAAACAGACATCTTAGTGTGCTTCACCCGATTAATAAACTTTTATTTCCTCACTTCCGCGATACAATAAATATCAATGGACTTGCTCGACAAGCTCTAATCAATGCTGGTGGTATTATAGAGCAAACATTTTTGCCCGGACCAAATTCCATCGAGATTTCTTCCGCAGTTTACAAGAATTGGGTTTTCACTGATCAAGCATTACCAGCTGATCTTATCAAGAGAGGATTAGCTGTTGAGGACCCTTCGTCCCCCCACGGCCTTCGTCTTGCGATAGAGGACTACCCATATGCCGTTGATGGATTAGAAATATGGGATGCTATTAAGGCGTGGGTCGAAGACTATGTTTCCTTATATTACCCAACAGATGATGCAGTCCAAAAAGACACTGAAATTCAAACTTGGTGGAAGGAAGCCGTCGAAAAGGGTCATGGTGACTTGAAAGACAAGCCATGGTGGCCTAAGATGCAATCTGTTCAAGACTTGGTTCAATCATGCTCCATTATCATATGGACTGCTTCTGCTCTTCATGCAGCTGTTAACTTTGGACAATATCCTTATGGAGGATATATCTTGAACCGTCCAACACTTAGTAGAAGATTTATCCCAGAGAAAGGAACTCCGGAATATGACGAGATGCTGAAAAGTCCTGAAAAAGCATATTTGAGAACAATTACACCAAAATATCAAACCCTTGTTGATCTTTCTGTGATCGAGATTTTGTCAAGACACGCTTCTGATGAAGTGTACCTTGGAGAGAGGGATAGCAAGTATTGGACATCTGATTCAAGGGCAGTTCAAGCTTTTCAAAAGTTTGGAAGCAAGTTAACTGAAATTGAAGGGAAAATCACTAAGAGGAACAATGAGGCTAGTTTGAGAAACCGTACTGGACCAGTGCAATTGCCCTACACTTTGCTCCTTCGTTCAAGTGAAGAAGATAGAAGCAACAATTCAAAGCAAGATGATGAATAA 2592 0.4039 MLGIFDKGQKIKGTVVLMPKNVLDFNAITNIGKGGILDTAGSLIGTVTNVVGQAVDTATAFLGRNVSMQLISATKTDVSGKGLVGKETFLSKHLPQLPTLGARQDAFSIFFEYDANFGIPGAFYIRNYTQAEFFLVSVTLDDIPNRGSVQFVCNSWVYNFKSYKKDRIFFTNDTYLPSQTPAPLNYFRKEELENLRGDGTGERKEWDRIYDYDIYNDLGNPDGGDKLVRPVLGGSSEYPYPRRVRSGRKPTRKDPKSEKPGVIYVPRDENFGHLKSSDFLMYGIKSLSQDVLPLFQAVIFDLNFTPNEFDSFDEVRGLFEGGIKLPTDILSQISPLPALKEILRTDGEQVLKFPPPQVIRAVSKSAWMTDEEFGREMVAGVNPCVIRLLQEFPPKSTLNTTVYGDQTSTITKEHLESNLGELTVEEALDGKRLFILDYHDAFMPYLERINLNAKAYATRTILFLKDDGTLKPIAIELSLPHPNGVQYGSESKVYLPADEGAESIIWLLAKAHVIVNDSCYHQLMSHWLNTHAVVEPFIIATNRHLSVLHPINKLLFPHFRDTININGLARQALINAGGIIEQTFLPGPNSIEISSAVYKNWVFTDQALPADLIKRGLAVEDPSSPHGLRLAIEDYPYAVDGLEIWDAIKAWVEDYVSLYYPTDDAVQKDTEIQTWWKEAVEKGHGDLKDKPWWPKMQSVQDLVQSCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRFIPEKGTPEYDEMLKSPEKAYLRTITPKYQTLVDLSVIEILSRHASDEVYLGERDSKYWTSDSRAVQAFQKFGSKLTEIEGKITKRNNEASLRNRTGPVQLPYTLLLRSSEEDRSNNSKQDDE 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00548 863 Gene3D - 176 274 - -
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Tsu08g00548 863 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Tsu08g00548 863 ProSiteProfiles PLAT domain profile. 43 171 IPR001024 GO:0005515
Tsu08g00548 863 MobiDBLite consensus disorder prediction 232 262 - -
Tsu08g00548 863 Gene3D PLAT/LH2 domain 1 175 - -
Tsu08g00548 863 Gene3D - 365 498 - -
Tsu08g00548 863 Gene3D - 499 858 - -
Tsu08g00548 863 Pfam Lipoxygenase 184 847 IPR013819 GO:0016702|GO:0046872
Tsu08g00548 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
Tsu08g00548 863 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Tsu08g00548 863 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Tsu08g00548 863 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Tsu08g00548 863 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 852 - -
Tsu08g00548 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 175 IPR036392 GO:0005515
Tsu08g00548 863 Gene3D - 275 362 IPR027433 -
Tsu08g00548 863 SMART LH2_4 9 172 IPR001024 GO:0005515
Tsu08g00548 863 PANTHER LIPOXYGENASE 1 852 IPR000907 GO:0016702|GO:0046872
Tsu08g00548 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 863 IPR013819 GO:0016702|GO:0046872
Tsu08g00548 863 CDD PLAT_LH2 10 172 IPR042057 -
Tsu08g00548 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Tsu08g00548 863 Pfam PLAT/LH2 domain 74 170 IPR001024 GO:0005515
Tsu08g00548 863 SUPERFAMILY Lipoxigenase 176 853 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00548 Tsu-Chr8 6007205 6012743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00548 9 851 Acyl Lipid Metabolism Gene Families AT1G55020 57.176 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00548 K15718 - gmx:547835 1375.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05342 02 62011494 62015137 Tsu08g00548 08 6007205 6012743 PCT