Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05178 ATGGCGGCGAATTCTTCTAATGGAGATCAACAAACAACCTCAAAGCCACCTCCCCAGCCATCTCCGTTGCGGTTTTCCAAATTCTTTCAGTCCAATATGAGAATTTTGGTCACCGGAGGAGCTGGTTTTATTGGTTCTCACCTAGTTGACAGATTgatggaaaatgaaaaaaacgAGGTAATTGTAGCTGATAACTACTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGACATCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCAACTGTTGGTTGAGGTTGATCGGATCTACCATCTTGCATGCCCTGCTTCTCCGATTTTCTACAAATACAATCCTGTGAAGACAATAAAGACAAATGTAATTGGAACCCTGAACATGCTTGGGCTTGCAAAGAGAGTTGGAGCAAGGATTTTGCTTACTTCTACTTCAGAAGTATACGGAGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGAAATGTCAACCCTATTGGAGTTCGAAGTTGCTATGATGAGGGCAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGCATTGCTAGAATCTTCAACACATATGGACCACGCATGAATATCGATGATGGGCGTGTTGTCAGCAACTTTATTGCTCAAGCAATTCGTGGTGAACCCCTAACAGTCCAACTTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCCGACATGGTTGATGGCCTTATTCGTCTCATGGAAGGAGAAAACACTGGTCCGATCAACATCGGAAACCCAGGGGAGTTTACTATGACTGAACTTGCTGAGAATGTGAAAGAGCTTATTAATCCAGATGTGGAGATAAAGATGGTGGAGAACACTCCCGACGATCCTCGGCAAAGAAAACCAATCATAACAAAAGCAACCGAATTGCTTGGATGGGAACCAAAGGTCAAGTTGCGAGATGGTCTTCCTCTTATGGAAGAGGATTTCCGTCTGAGGCTTGGAGTTCCCAAGAAGAACTAA 1041 0.4284 MAANSSNGDQQTTSKPPPQPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQLPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMTELAENVKELINPDVEIKMVENTPDDPRQRKPIITKATELLGWEPKVKLRDGLPLMEEDFRLRLGVPKKN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05178 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 337 IPR036291 -
Tsu02g05178 346 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 346 - -
Tsu02g05178 346 Gene3D - 32 339 - -
Tsu02g05178 346 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g05178 346 CDD UGD_SDR_e 33 337 - -
Tsu02g05178 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 346 IPR044516 GO:0042732|GO:0048040|GO:0070403
Tsu02g05178 346 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05178 Tsu-Chr2 60758832 60763325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05178 30 345 Miscellaneous Gene Families AT1G02000 23.647 4.27e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05178 K08678 - qsu:112026144 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05178 02 60758832 60763325 Tsu02g05178 02 60758832 60763325 ECH
Tsu02g05178 02 60758832 60763325 Tsu02g02067 02 20108066 20111783 ECH
Tsu02g05178 02 60758832 60763325 Tsu02g03709 02 41947762 41951052 PCT
Tsu02g02067 02 20108066 20111783 Tsu02g05178 02 60758832 60763325 PCT