Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04466 atggggGCTAGTATttcttcaacatcatcaataagagaaaaatatgatgaagggtcaaattcttcatcatcaagAACTAGTCTTGGTGATATTCCAGAGAGTTGCATCTCTTCTATCCTTATGAATCTTGATCCACCTGATATATGCAAATTGGCTAGAGTTAATCATGCTTTTCATAGAGCTTCTTCTTCTGATTTTGTTTGGGAATCTAAGTTACCATCATGCTACAATTTTCTTGCTAATAAAGTTCTTGGTCAAGAAAATATTTCTACTATGACTAAGAAAAATATCTACACAAAACTTTGTCAACGCAATCTCTTTGATGATGGTACCAAAGAAGTTTTGTTGGATAAATGTAGTGGACAAGTTTGTTTATTCATGTCATCAAAGTCTTTGAAGATAACAGGAATAGAAGATAGAAGATATTGGATTTATATTCCAACTGAGGAATCAAGGTTTAAAAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAGTAGGGGAGTTAGAGTTTGTATTCCCTGTGGGGAGTTACAGTATAACTTTCAGACTCCAATTGGGAAAATCATCGAAACGATTGGGCCGGCGTGTGTGCAATGTTGATCAAGTTCATGGCTGGGACATCAAGCCCGTTCGATTCCAACTCTCTACATTGGATGGTCAGCGTTCGATCTCCGAGTGTTACTTAAATGGGCCAGGGGAATGGGTTTATTACCATGTAGGAGATTTCATGGTTGTAAAGCCCAATGAGCccataaaaataaagttttcttTGGCCCAAATTGATTGTACTCATACCAAAGGTGGCCTCTGTATAGATAGTGCAATTATTTGCCCAACTGAGTTTAGAGAAAGACTCAAAAAAATTTAG 876 0.3402 MGASISSTSSIREKYDEGSNSSSSRTSLGDIPESCISSILMNLDPPDICKLARVNHAFHRASSSDFVWESKLPSCYNFLANKVLGQENISTMTKKNIYTKLCQRNLFDDGTKEVLLDKCSGQVCLFMSSKSLKITGIEDRRYWIYIPTEESRFKNVAYLQQMWWVEVVGELEFVFPVGSYSITFRLQLGKSSKRLGRRVCNVDQVHGWDIKPVRFQLSTLDGQRSISECYLNGPGEWVYYHVGDFMVVKPNEPIKIKFSLAQIDCTHTKGGLCIDSAIICPTEFRERLKKI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04466 291 ProSiteProfiles F-box domain profile. 25 71 IPR001810 GO:0005515
Tsu01g04466 291 SUPERFAMILY F-box domain 16 101 IPR036047 GO:0005515
Tsu01g04466 291 PANTHER F-BOX PROTEIN 1 290 - -
Tsu01g04466 291 PANTHER F-BOX PROTEIN PP2-A15 1 290 - -
Tsu01g04466 291 MobiDBLite consensus disorder prediction 1 28 - -
Tsu01g04466 291 SMART fbox_2 31 70 IPR001810 GO:0005515
Tsu01g04466 291 Pfam Phloem protein 2 123 281 IPR025886 -
Tsu01g04466 291 Gene3D - 14 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04466 Tsu-Chr1 52340184 52343381 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04466 - - gmx:100795463 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04466 01 52340184 52343381 Tsu05g00303 05 2266553 2269987 ECH
Tsu01g04466 01 52340184 52343381 Tsu01g04466 01 52340184 52343381 ECH
Tsu06g03072 06 40453455 40456469 Tsu01g04466 01 52340184 52343381 PCT