Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04358 ATGTCAAAACAAACATATAGTGTATGTTTATGTTGGCGTAGAAGATTCAAGCTAGCTTTATCAGAAGCACCACAAGAAATCAAAACCCTTTTCAACAATTACTCAGAAAATGATCTTATGACAGCTACAAACCTTAAAAGATTCTTAATTGAAGTTCAGAATCAAGAACAAGCTACTGAAGAAGAAGCACAAGCTATCATTGATAGTTTCAAACATTTTCATAGAAGGGGTGCTGGACTTAATCTTGAAACTTTTTTCAAGTTTTTGTTTAGTGATAGTAATCTTCCTCTTTCACCTTCAAAAGGGGTGCACCATGACATGACATTACCCTTGTCTCATTATTTCATATATACTGGTCACAATTCCTATCTAACCGGAAATCAGCTGAGCAGTGACTGCAGTGACGTTCCGATTGTGAACGCATTGAAGAGAGGTGTAAGGGTAATTGAATTGGACTTATGGCCTAATGCATCAAAGGATGACGTCGATGTTCTTCATGGGAGGACATTGACTACACCTGTAGAGCTCATTAGATGTTTGAGGTCTATTAAGGAACATGCCTTTGTCGCATCGGAATATCCGGTTGTAATAACCCTAGAAGACCATCTTACTCCTGATCTTCAGGCTAAAGTGGCTGAGATGGTTACTCAAACATTTGGAGAGATACTATTTACTCCTGGCTCAGAAAACATAAAGGAATTCCCTTCTCCCGAATCACTAAAAAAGAGGATTATTATATCAACTAAACCACCTAAGGAGTACCTTGAGATAAAAGAAGTAAAGGAAAAAGAGGATGAGTCACTGCAAGGAAAAGCTTCGGGCGACGATGAAGCTTGGGGGAAGGAGGTCCCAAGCTTCAAATGCGGTTCAATATCCGATTACAAGGTAAACAACTCGGATAAAGATACTCACGATGAAGAAGATCTTTACGAATCGGACAAGTCACAACATCATAATGTAGCTCCGGAATATAAAGGTTTAATTGCCATTCATGCTGGAAAGTCGAAAGGAGGAATAGAGGCATGGTTCAAAGTAGATCCGGATAAAGCTAAGCGTATAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGCTATAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGAAGAATATTCTGAGGGTGTTTCCGAAAGGTACTCGCATTGACTCGTCGAATTATAACCCATTAATTGGTTGGGTTCACGGCGCTCAAATGGTTGCATTCAACATGCAGGGATATGGGAGATCACTTTGGTTGATGCATGGAATGTTTAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTTTCTCTTAAAAACTGATCCAAATGACGAGGTCTTTGATCCTAGAGCTAAGTTACCTGTGAAAACTACTTTGAAGGTGACTGTATTTATGGGAGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATATTCACCTCCAGATTTCTATGCAAGAGTTGGGATTGCTGGTGTCCCTAGTGATAGTATAATGAGAAAAACAAAGGCAATAGAGGATAATTGGTTGCCTACATGGAATGAGACATTCGAGTTCCCGCTTACTGTTCCGGAACTAGCCCTACTTCGTATAGAAGTTCATGAGTATGACATGTCTGAGAAAGATGACTTTGGTGGTCAAACATGTCTTCCTCTTTTGGAGTTAAGAAGCGGCATTCGAGCAGTTTCACTTCATAGCCAGAAAGGCGATAAATACAATTCTGTCAAGCTTCTTATGCGCTTTGAATTTCTTTGA 1770 0.3932 MSKQTYSVCLCWRRRFKLALSEAPQEIKTLFNNYSENDLMTATNLKRFLIEVQNQEQATEEEAQAIIDSFKHFHRRGAGLNLETFFKFLFSDSNLPLSPSKGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIVNALKRGVRVIELDLWPNASKDDVDVLHGRTLTTPVELIRCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMVTQTFGEILFTPGSENIKEFPSPESLKKRIIISTKPPKEYLEIKEVKEKEDESLQGKASGDDEAWGKEVPSFKCGSISDYKVNNSDKDTHDEEDLYESDKSQHHNVAPEYKGLIAIHAGKSKGGIEAWFKVDPDKAKRISLSEQQLEKAAITHGKEIVRFTQKNILRVFPKGTRIDSSNYNPLIGWVHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLKTDPNDEVFDPRAKLPVKTTLKVTVFMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPSDSIMRKTKAIEDNWLPTWNETFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPLLELRSGIRAVSLHSQKGDKYNSVKLLMRFEFL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04358 589 ProSiteProfiles C2 domain profile. 441 571 IPR000008 -
Trre9g04358 589 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 454 IPR017946 GO:0006629|GO:0008081
Trre9g04358 589 MobiDBLite consensus disorder prediction 297 316 - -
Trre9g04358 589 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Trre9g04358 589 CDD C2_PLC_like 459 588 - -
Trre9g04358 589 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 351 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g04358 589 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 71 IPR015359 -
Trre9g04358 589 SMART plcx_3 105 249 IPR000909 -
Trre9g04358 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 588 IPR035892 -
Trre9g04358 589 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Trre9g04358 589 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Trre9g04358 589 PRINTS Phospholipase C signature 379 400 IPR001192 GO:0035556
Trre9g04358 589 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Trre9g04358 589 PRINTS Phospholipase C signature 400 418 IPR001192 GO:0035556
Trre9g04358 589 PRINTS Phospholipase C signature 555 565 IPR001192 GO:0035556
Trre9g04358 589 SMART C2_3c 461 569 IPR000008 -
Trre9g04358 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Trre9g04358 589 SUPERFAMILY EF-hand 17 106 IPR011992 -
Trre9g04358 589 FunFam Phosphoinositide phospholipase C 456 589 - -
Trre9g04358 589 Gene3D - 22 101 - -
Trre9g04358 589 MobiDBLite consensus disorder prediction 294 316 - -
Trre9g04358 589 Pfam C2 domain 483 563 IPR000008 -
Trre9g04358 589 Gene3D C2 domain 456 589 IPR035892 -
Trre9g04358 589 SMART plcy_3 324 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g04358 589 SUPERFAMILY PLC-like phosphodiesterases 105 442 IPR017946 GO:0006629|GO:0008081
Trre9g04358 589 CDD PI-PLCc_plant 104 428 - -
Trre9g04358 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g04358 589 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 588 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04358 Trre-Chr9 51383241 51387246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04358 1 589 Acyl Lipid Metabolism Gene Families AT3G55940 66.443 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04358 K05857 - gmx:547864 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02089 5 15523970 15527224 Trre9g04358 9 51383241 51387246 ECH
Trre9g03725 9 45636072 45643026 Trre9g04358 9 51383241 51387246 ECH
Trre9g04358 9 51383241 51387246 Trre9g04358 9 51383241 51387246 ECH
Trre5g02089 5 15523970 15527224 Trre9g04358 9 51383241 51387246 PCT