Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03725 ATGAACATAGATGAATTGTACAACTTTTTAGTTCATTTTCAAGGAGAAGAGGATGGTGATGCTACTTTAAGACATGCTCAATCAGTTTTCCATAGTTTAAGGCATCTCAATATATTTCAAAGGAGAGGTCTTCATTTTGATGCCTTCTTTCGTTATCTCTTCGGCGACCTTAATGGTCCCCTTAATGATCAGGTGCATCAAGATATGAATGCTCCATTGGCTCATTATTTTTTGTACACAGGGCACAACTCCTACTTAACTGGAAATCAATTGAGCAGTGAAAGCAGTACTGCCCCAATAATAAAGGCTCTGAAAAAAGGAGTTAGAGTAATTGAATTAGATTTATGGCCAAATTCTAGAGAAGATGATGTGGAAGTTCGTCATGGAGGGACTCTGACTTCTTCAGTGAAACTAAGAGATTGTTTGAATGCCATTAGGGACAATGCATTTGATGCCTCTAAGTATCCTGTTATAATAACTTTTGAAGACCATATAACTCCACCCCTTCAACGCAAAGTGGCCAAAATGGTGGATGATATATTTGGAGGTTTGCTGTTTCGTCCTAGTTATTCGCGTCAAATGAAGACATTCCCTTCACCAGAATCGTTGAAGGGGAAAATTCTAATTTCAACTAAACCACCGGAGTCTCCTGAAATTCAAGGGCAAAGAATACAAGAGGAAGAAATTGAGTGGCTTGAGGACAAAGATTATAAATCTAGAGAAAATGAAAAGAATGAATCAGATGATGAGAGTGAAGAGGATGAAACTCTTGGATATAGAAATTTGATTTCTATACATGCTGGGAAGCCAAAAGGTAATGTAGAACATTGGTTGATGGAACATGATCAAGTTAGGCGTCTTAGCTTGAGTGAGCAAGTTCTTGAAGAAATTGCCATAACTCGTGCAAGTGATATTGTCAGATTCACTCAGAGGAATTTACTTAGAATATATCCAAAGGGTTCACGAATAGACTCCTCCAATTATGATCCTATGAATGGATGGATGCATGGAGCTCAAATGGTAGCATTTAATATGCAGGGACATGGACATTATCTTTGGTATATGGAAGGAATGTTCAAAGCCAATGGTGGTTGTGGGTATGTTAAGAAACCTGACTTCTTATTAAACAATAATAAGATCTATGATCCTAGAGTAAACAACAGATCAATCCTAAAAACTCTTCAGGTTGTAGTATACATGGGTGAGGGGTGGCATTCAGAATTTGGCCAAACACACTTTGATTTTTATTCTCCACCTGATTTTCGTGTACAGGTTGGGATTCATGGTGTCCCAGTTGACACAGACACAAAAATAACAAGGACAATTGAAGATGAGTGGATCCCAGTTTGGAATGAAGAATTAATCTTCCCATTAACATGTCCAGAATTGGCCATATTACACATTAAAGTTATTGAACGTGACTTTTCTGGACAACATGATTTTGCTGGACAAGCATGTTTACCTGTTTCAGAACTAAAAGAAGGAATTCGTGTTGTTCGTTTGTGTGACCGTAAAGGTGAACCTTACAAGTATGTTAGGCTTCTAATTCAATTTAGATTTTCTCATCACTAA 1572 0.3753 MNIDELYNFLVHFQGEEDGDATLRHAQSVFHSLRHLNIFQRRGLHFDAFFRYLFGDLNGPLNDQVHQDMNAPLAHYFLYTGHNSYLTGNQLSSESSTAPIIKALKKGVRVIELDLWPNSREDDVEVRHGGTLTSSVKLRDCLNAIRDNAFDASKYPVIITFEDHITPPLQRKVAKMVDDIFGGLLFRPSYSRQMKTFPSPESLKGKILISTKPPESPEIQGQRIQEEEIEWLEDKDYKSRENEKNESDDESEEDETLGYRNLISIHAGKPKGNVEHWLMEHDQVRRLSLSEQVLEEIAITRASDIVRFTQRNLLRIYPKGSRIDSSNYDPMNGWMHGAQMVAFNMQGHGHYLWYMEGMFKANGGCGYVKKPDFLLNNNKIYDPRVNNRSILKTLQVVVYMGEGWHSEFGQTHFDFYSPPDFRVQVGIHGVPVDTDTKITRTIEDEWIPVWNEELIFPLTCPELAILHIKVIERDFSGQHDFAGQACLPVSELKEGIRVVRLCDRKGEPYKYVRLLIQFRFSHH 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03725 523 MobiDBLite consensus disorder prediction 230 256 - -
Trre9g03725 523 SMART plcx_3 67 212 IPR000909 -
Trre9g03725 523 Pfam Phosphatidylinositol-specific phospholipase C, X domain 69 212 IPR000909 -
Trre9g03725 523 Gene3D Phosphatidylinositol (PI) phosphodiesterase 64 386 IPR017946 GO:0006629|GO:0008081
Trre9g03725 523 SMART plcy_3 259 375 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g03725 523 FunFam Phosphoinositide phospholipase C 388 521 - -
Trre9g03725 523 CDD C2_PLC_like 392 521 - -
Trre9g03725 523 ProSiteProfiles C2 domain profile. 371 503 IPR000008 -
Trre9g03725 523 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 520 IPR001192 GO:0035556
Trre9g03725 523 FunFam Phosphoinositide phospholipase C 64 385 - -
Trre9g03725 523 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 393 520 IPR035892 -
Trre9g03725 523 MobiDBLite consensus disorder prediction 230 245 - -
Trre9g03725 523 SUPERFAMILY PLC-like phosphodiesterases 67 376 IPR017946 GO:0006629|GO:0008081
Trre9g03725 523 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 67 212 - -
Trre9g03725 523 Pfam C2 domain 394 495 IPR000008 -
Trre9g03725 523 PRINTS Phospholipase C signature 196 213 IPR001192 GO:0035556
Trre9g03725 523 PRINTS Phospholipase C signature 98 118 IPR001192 GO:0035556
Trre9g03725 523 PRINTS Phospholipase C signature 334 352 IPR001192 GO:0035556
Trre9g03725 523 PRINTS Phospholipase C signature 313 334 IPR001192 GO:0035556
Trre9g03725 523 PRINTS Phospholipase C signature 487 497 IPR001192 GO:0035556
Trre9g03725 523 PRINTS Phospholipase C signature 72 90 IPR001192 GO:0035556
Trre9g03725 523 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 286 373 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g03725 523 Gene3D C2 domain 389 523 IPR035892 -
Trre9g03725 523 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 288 374 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g03725 523 SMART C2_3c 393 501 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03725 Trre-Chr9 45636072 45643026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03725 1 518 EF-hand Containing Proteins AT5G58670 55.534 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03725 K05857 - gmx:100817915 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03725 9 45636072 45643026 Trre9g03725 9 45636072 45643026 ECH
Trre9g03725 9 45636072 45643026 Trre5g02089 5 15523970 15527224 ECH
Trre9g03725 9 45636072 45643026 Trre9g04358 9 51383241 51387246 ECH