Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02089 ATGTCTTCTAAACCAAAAAAACAGACTTACAGCGTTTGTTTCTGTTGCCGGCGCCGGTTTAAGCTCGGCGTATCGGAAGCACCACCGGAGATAAAAGAACTTTTCCATCGTTACTGTGATGAAAATGGGATCATGACTGCTTCTCATCTCAAAAGGTTCCTTATTGAGGTCCAGAAACAAGAAGACAATATCACAGATGAAGAATTACAAGCTATCATTGATAGTCAGAAACATTTGAGTATCTTTCATCGTAGAGGTTTCAATCTTGAAACTTTCTTCAAGTTTCTCTTCAGTGATAGTAATCCTCCTCTTGTTCCTTCTCGTGGGGTGCATCATGATATGAGTTTACCATTGTCTCATTATTACATATACACTGGTCATAATTCATATCTAACTGGAAATCAGCTTAGTAGTGATTGCAGTGATGCCCCTATTATCCATGCACTTCAGAGAGGTGTAAGGGTTATTGAATTAGATATATGGCCTAATGCATCTAAGGAAGATGTTGATGTTCTTCATGGAAGGACATTGACGACTCCTGTGGCGCTTATAAAATGTTTGACATCTATTAAGGAGTATGCGTTTGTTGCGTCAGAATATCCTGTTGTAATAACCTTGGAAGACCACCTTACTCCTGATCTTCAGGCAAAAGTGGCTCAGATGGTTACTCAAACATTTGGGGACATACTATTTTGTCCTAGCACAGAAGGCTTGAAGGAATTTCCTTCACCTGATTCACTTAAAAAAAGGATCATCATATCAACCAAGCCACCTAAGGAGTACCTTGAGGCAAAAGAAGGAAAGGAAAAGGAGGAATCACAGAAGGGAAAGCCTGCAGATGATGAAGAAGCTTGGGGCAAAGAAGTTCCTAGTTTGAGAGGGGGTACCATAGCTGATTACAAGAACACTGGGGATGATGACGATGATCTTAGTGACGATGAAGATGATGACGAGGAAAAGTCACGTCAAGATGGATCGGATGAATATAGACGTTTAATTGCTATTCATGCCGGCAAACCTAAAGGTGGAATAGTGGAATGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAATCACAACTCGAAAAGGCTGCTGAAACATATGGAAAAGAAATTGTCAGGTTTACTCAGCAGAATATACTGAGAGTGTATCCGAAAGGTACACGCATTACCTCGTCAAATTATAATCCATTAATTGGGTGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTACGGAAGATCTCTTTGGTTGATGCAAGGAATGTTTAAAGCCAATGGCAGATGTGGTTATGTTAAAAAACCAGATTTTCTGTTAAAAACTGGTCCCATTAATGAGATTTTTGATCCTAAAGTTCCTTTACCGCCGAAAACTACTTTGAAGGTGACTGTATATATGGGGGAAGGTTGGTATTATGATTTCAAGCATACACACTTTGATCAATTCTCACCTCCAGACTTCTATGCAAGGGTTGGGATTGCTGGTGTTCCATCTGATACTGTTATGAAAAAAACTAAGTCAATAGAGGATAGTTGGTTGCCTTCTTGGAATGAGGTATTCGAGTTCAAACTTTCTGTTCCGGAGTTGGCGCTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAAAAGGATGACTTTGGCGGGCAAACATGTTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCAATTCCACTTCATTCCCGCAAAGGTGATAAATACAACAATGTAAAGCTTCTCATGCGCTTTGAATTCATCTGA 1785 0.4022 MSSKPKKQTYSVCFCCRRRFKLGVSEAPPEIKELFHRYCDENGIMTASHLKRFLIEVQKQEDNITDEELQAIIDSQKHLSIFHRRGFNLETFFKFLFSDSNPPLVPSRGVHHDMSLPLSHYYIYTGHNSYLTGNQLSSDCSDAPIIHALQRGVRVIELDIWPNASKEDVDVLHGRTLTTPVALIKCLTSIKEYAFVASEYPVVITLEDHLTPDLQAKVAQMVTQTFGDILFCPSTEGLKEFPSPDSLKKRIIISTKPPKEYLEAKEGKEKEESQKGKPADDEEAWGKEVPSLRGGTIADYKNTGDDDDDLSDDEDDDEEKSRQDGSDEYRRLIAIHAGKPKGGIVECLKVDPDKVRRLSLSESQLEKAAETYGKEIVRFTQQNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGRCGYVKKPDFLLKTGPINEIFDPKVPLPPKTTLKVTVYMGEGWYYDFKHTHFDQFSPPDFYARVGIAGVPSDTVMKKTKSIEDSWLPSWNEVFEFKLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAIPLHSRKGDKYNNVKLLMRFEFI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02089 594 CDD PI-PLCc_plant 111 433 - -
Trre5g02089 594 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 15 593 IPR001192 GO:0035556
Trre5g02089 594 MobiDBLite consensus disorder prediction 305 322 - -
Trre5g02089 594 Pfam C2 domain 467 567 IPR000008 -
Trre5g02089 594 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 466 593 IPR035892 -
Trre5g02089 594 MobiDBLite consensus disorder prediction 260 288 - -
Trre5g02089 594 SUPERFAMILY EF-hand 21 113 IPR011992 -
Trre5g02089 594 CDD C2_PLC_like 464 593 - -
Trre5g02089 594 Gene3D - 26 107 - -
Trre5g02089 594 SMART C2_3c 466 574 IPR000008 -
Trre5g02089 594 PRINTS Phospholipase C signature 240 257 IPR001192 GO:0035556
Trre5g02089 594 PRINTS Phospholipase C signature 405 423 IPR001192 GO:0035556
Trre5g02089 594 PRINTS Phospholipase C signature 384 405 IPR001192 GO:0035556
Trre5g02089 594 PRINTS Phospholipase C signature 560 570 IPR001192 GO:0035556
Trre5g02089 594 PRINTS Phospholipase C signature 117 135 IPR001192 GO:0035556
Trre5g02089 594 PRINTS Phospholipase C signature 143 163 IPR001192 GO:0035556
Trre5g02089 594 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 112 256 - -
Trre5g02089 594 Pfam Phosphatidylinositol-specific phospholipase C, X domain 114 256 IPR000909 -
Trre5g02089 594 SMART plcx_3 112 256 IPR000909 -
Trre5g02089 594 SMART plcy_3 329 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02089 594 Coils Coil 50 70 - -
Trre5g02089 594 Gene3D C2 domain 459 594 IPR035892 -
Trre5g02089 594 MobiDBLite consensus disorder prediction 260 329 - -
Trre5g02089 594 FunFam Phosphoinositide phospholipase C 461 594 - -
Trre5g02089 594 SUPERFAMILY PLC-like phosphodiesterases 112 447 IPR017946 GO:0006629|GO:0008081
Trre5g02089 594 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 359 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02089 594 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 358 444 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02089 594 Gene3D Phosphatidylinositol (PI) phosphodiesterase 108 458 IPR017946 GO:0006629|GO:0008081
Trre5g02089 594 ProSiteProfiles C2 domain profile. 447 576 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02089 Trre-Chr5 15523970 15527224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02089 7 594 Acyl Lipid Metabolism Gene Families AT3G55940 67.454 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02089 K05857 - gmx:100784534 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02089 5 15523970 15527224 Trre9g04358 9 51383241 51387246 ECH
Trre9g03725 9 45636072 45643026 Trre5g02089 5 15523970 15527224 ECH
Trre5g02089 5 15523970 15527224 Trre5g02089 5 15523970 15527224 ECH
Trre5g02089 5 15523970 15527224 Trre9g04358 9 51383241 51387246 PCT