Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03726 ATGCCGACGCCGGTAAGCTCCGCTCGGCAATTTCTAACAGACGAAGCCGCGCGTGCATTAGACGACGCAGTAATAGTAGCACGCCGTCGTTGCCACGCGCAAACAACCTCACTTCACGCCGTATCATCTTTACTTTCCTTACCATCTTCTTCTCTCCGGGAAGCTTGCTGCCGAGCTAGAACCTCCGTTAGATTCTCCTCCAATCCGTCATTCTCGCATCGTCTTCAGCTCCGAGCACTCGAGCTTTCCGTCGGTGTATCTCTCGACCGTCTTCCATCAGCGACATCAAAAACGACGGAGGAGCCTCCGATTTCGAATTCGCTCATGGCGGCAATTAAACGGTCGCAAGCGAATCAGCGTCGGTCGCCGGAGAGTTTTCATTTCTATAATCAGAATCAAAACGGTTCTTCTTTGTTGAAAGTTGAACTTAAACACTTTGTTTTATCGATTCTTGATGATCCAATAGTGAATCGTGTTTTTGATGAAGCTGGTTTTCGTAGCTGTGATGTTAAACTTGCTTTGCTTCAACCACCGGTTCAATCTTCTTCTCGGTTTTTTTCTCCTCCGGTTTTTCTTTGTAACCTTGAACCGGGTCGAACCGGTTTAACTACTTTCCCTTTAGGGATTGATGAGAATTCAAGAAGAATAAGTGAAGTGATTTTGAAAAAGAAAAAGAGAAATCCTTTTTTGATGGGTGTTTATGCAAAAGATGCTTTTAGAAGTTTTGTTGAGTTGTTACAAAAGGGTCGAGGTGGTGCTTTGTTTCCACCTGGAATGTCTGGTTTGAATGTTGTGTGTGTTGAAAAAGAGATTCATGAGTTTTTGAAGCAAGGTGGTAGTGAAGAGAAAATGAGTTTGAGGTTTAAGGAATTGGGTTGTGAAGTTGAGAAGTGTTTGGGTCCTGGTGTTATTGTTGGGTTTGGAGAGATTGAGGTTTTTGTTGGAGATTCTATGAATGATGTTGCTGCTGTTAAATTTGTTGTTTCGGAGTTGACTAGGTTGTTGGAGATTCATGGCGAGAAGATTTGGTTGATGGGTGTGGCTGAAAATTCCGAGGCTTATTCGAAGTTTTTGAGTTTGTTTCCGGGTGTCGAGAATGATTGGGATTTGCATTTGCTTACTGTGACATCTGCTACTCCTTCAATGGAAGGACTATACTCTAAATCTAGTTTGATGGGGTCATTTGTTCCATTTGGTGGATTCTTTTCTACACCTTCTGAAAGCAAAAGTCCAGTAAGCTCTACAAATTCATCGTTTACTCGTTGCGACAAATGCAATGAAAAATATGAACAAGAAGTTGCCGATTTTTTAAAGACTAATGAAGAAAATACAAATTTGAATGATAAGATATCGGAATTTCAAAAGAAATGGAATGATATTTGTCAACGTCTTCATCAAACAAGGTCTCAAGTTCCATCCCTTGAGGTTTTACGGTTTGGTTCGGGTTTTAAGGAAAGCAGCAGTAAAGATCCATCACATAATGAACTCCAATGTTCTACTCCACTTTCCTACATGCCTAAAGAGTTGCATGGCACGTTTCCATCAAAACAGTTATCACCTGTTCCAGTACATACCGATACAGTTGGTGTCAATGTTAGAACTGATCATGTACCGAAAGTTACTGAGACTCGGCTAATTGACGTGGAGACTCGAGTTCCCCCTTCACGTATGGCTAATATGAGTGTGCTTGATAACAAATCATCTTCATCTGTAACTCCTGTGACCACAGATTTAGGACTGGGAACGTTATATACACCAATTGCTTGCAAGCCAGATATCCCAAAATTTCAAGATAAAATAAAGCATTTTGAGCACTTTTCACAGTCGGCTTCAGCTGATTGTGTTCCTATCGATAGAAGTACATCACACCAGATTGCTAGATCTTCCTGTGCTGTTTCAAACTTGGCAGCAAAATTTGATTCAGTAGATTTCAAGTCTCTTAATCAACTTTTCTCTGAAAAGGTTGGTTGGCAGGATCAGGCCATATGCGATATAAACCGAACTTTGTTCCTTCGTAAATCCGGCGAGGGAAAGAGTAGAGACTCGCATGGTAGAGCTGACATATGGTTTGCTTTCCTCGGACCAGATGTAATCGGGAAAAAGAAAATTGCTTCAGTACTTGCAGAGACTATATTTGGAAACGCAGAAAGCATAATCTCTGTGGATCTAGGCTTCCGGGACAGGTTTTACCCGTCAAACTCGATTTTTGAATGCCAAAAATCATTTTGTTATGATTTATTTATGAGGAAGACAGTTAATGACTATATTGCTGGGGAGTTGAGTAAAAATCCTCATTCCGTCGTGTTTCTTGAAGATGTAGATAAAGCTGATTTTCTGGTGCAGAGTAGTTTATTGCAGGCAATAAGAAGAGGTAAATTTCCAGACTCACATGGAAGAGAAATTAGCATCAACAACACAATCTTTATTTTAACCTCAACTGCCTCTAAAGGCAACGGCTCTTCTGCTTCGGAGCACAGTAAAATGTTTTTTGAAGAAACAATCCTTGACGCCAAAAGATATCAAATGCAATTGCTACTTGGAGATACATCAGAGGATGCCACAAGAAGCTTTAGTACAAACGTCAAGATTGTGCCGAGAAAAGGGTTTTCAAAACCCTCATTTCCAAATAAAAGAAAGCAGGCTGATACTAGTGACATCAAAGAGGGAGCAACGAGCAAGATGCAAAAACAGGTACGCGAGACATCAATGTCCAATCTGGATTTAAATATGCCTCTAGAAGAGGGCGAGGAGGGTATGAATGATAACGACCTTGAAAGAGAAACCGTAGTGGAAAACTCAGACTCATGGTTTAGTGATTTCTGTGATCATATGGACGAAAAAGTGATTTTCAAGCCGTTCAATTTCAACGTGCTTGCCGAAAAATTACAAAAAAATATTAGCATACAATTTCAAAAGACATTTGGTTCAGAATTTCAGTTGGAAATTGATTATGAGGTAATGACACAAATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAATGCAGTAAATGATTGGATTGAAAGTGTTCTAGGCAAAAGCTTCATTGAAGCTCAGAAGAAATATCACCATGCAAATAAATATGTTGTGAAACTAGTTAACTGTGAATCTATTTTTGTGGAAGAGCCTAATCTTGGAATATGCCTTCCAGCTAGCATTAACATGAAGTAA 3171 0.4015 MPTPVSSARQFLTDEAARALDDAVIVARRRCHAQTTSLHAVSSLLSLPSSSLREACCRARTSVRFSSNPSFSHRLQLRALELSVGVSLDRLPSATSKTTEEPPISNSLMAAIKRSQANQRRSPESFHFYNQNQNGSSLLKVELKHFVLSILDDPIVNRVFDEAGFRSCDVKLALLQPPVQSSSRFFSPPVFLCNLEPGRTGLTTFPLGIDENSRRISEVILKKKKRNPFLMGVYAKDAFRSFVELLQKGRGGALFPPGMSGLNVVCVEKEIHEFLKQGGSEEKMSLRFKELGCEVEKCLGPGVIVGFGEIEVFVGDSMNDVAAVKFVVSELTRLLEIHGEKIWLMGVAENSEAYSKFLSLFPGVENDWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSESKSPVSSTNSSFTRCDKCNEKYEQEVADFLKTNEENTNLNDKISEFQKKWNDICQRLHQTRSQVPSLEVLRFGSGFKESSSKDPSHNELQCSTPLSYMPKELHGTFPSKQLSPVPVHTDTVGVNVRTDHVPKVTETRLIDVETRVPPSRMANMSVLDNKSSSSVTPVTTDLGLGTLYTPIACKPDIPKFQDKIKHFEHFSQSASADCVPIDRSTSHQIARSSCAVSNLAAKFDSVDFKSLNQLFSEKVGWQDQAICDINRTLFLRKSGEGKSRDSHGRADIWFAFLGPDVIGKKKIASVLAETIFGNAESIISVDLGFRDRFYPSNSIFECQKSFCYDLFMRKTVNDYIAGELSKNPHSVVFLEDVDKADFLVQSSLLQAIRRGKFPDSHGREISINNTIFILTSTASKGNGSSASEHSKMFFEETILDAKRYQMQLLLGDTSEDATRSFSTNVKIVPRKGFSKPSFPNKRKQADTSDIKEGATSKMQKQVRETSMSNLDLNMPLEEGEEGMNDNDLERETVVENSDSWFSDFCDHMDEKVIFKPFNFNVLAEKLQKNISIQFQKTFGSEFQLEIDYEVMTQILAAAWLSDKKNAVNDWIESVLGKSFIEAQKKYHHANKYVVKLVNCESIFVEEPNLGICLPASINMK 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03726 1056 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 802 816 IPR001270 GO:0005524
Trre9g03726 1056 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 769 787 IPR001270 GO:0005524
Trre9g03726 1056 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 690 708 IPR001270 GO:0005524
Trre9g03726 1056 Gene3D - 623 952 IPR027417 -
Trre9g03726 1056 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1026 - -
Trre9g03726 1056 MobiDBLite consensus disorder prediction 868 900 - -
Trre9g03726 1056 Pfam AAA domain (Cdc48 subfamily) 690 835 IPR003959 GO:0005524|GO:0016887
Trre9g03726 1056 Gene3D - 10 177 IPR036628 -
Trre9g03726 1056 ProSiteProfiles Clp repeat (R) domain profile. 8 182 IPR004176 -
Trre9g03726 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 994 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03726 Trre-Chr9 45651007 45655702 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03726 - - gmx:100804458 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03726 9 45651007 45655702 Trre9g03726 9 45651007 45655702 ECH
Trre9g03726 9 45651007 45655702 Trre5g02095 5 15612301 15616757 ECH
Trre5g00947 5 6528415 6533972 Trre9g03726 9 45651007 45655702 ECH
Trre5g02095 5 15612301 15616757 Trre9g03726 9 45651007 45655702 ECH
Trre5g00947 5 6528415 6533972 Trre9g03726 9 45651007 45655702 PCT