Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00947 ATGCCGACGCCGGTAAGCACAGCGAGGCAATGCTTAACAGACGAAGCAGCGCGTGCACTCGACGACGCAGTTTCAGTAGCGCGTAGAAGAAGCCACCCTCAAACAACATCTCTTCACGCCATCTCAGCCTTACTTTCTCTTCCCTCCAACGCGCTACGTGACGCGTGTGCACGCGCCGGCACTTCACCATACTCACCTCGTCTCCAGTTCCGTGCCTTAGAGCTCTCCGTCGGAGTCTCCCTCGACCGCCTCCCAACTTCCAAGTCCGCCGCCGTCTCTCCCGCCGGCGAAAACGGCGGACCACCGGTTTCTAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAATCAACGTCGTCATCCAGATAGTTTCCATTTACTTCAAATAATGCAACAACAAAATCAACAGAATCAAACGGCGTCGTTTTTGAAAGTTGAATTGAAGCATTTCATTCTTTCGATTCTTGATGATCCTATTGTTAGTAGAGTTTTCGCTGAAGCAGGTTTTCGTAGCTATGATGTTAAATTCGCTTTGCTTCAACCTCCACCACCTTCTAGATTCTTCCATCGCTCTTCTCCTCCGGTTTTTTTAGGTAACATCGAACCGTTACCAGAACGGTTCGATGAAAATTCAAGAAGGATTGTTGAGGCTATTGCTGGAAAAAAGAATCCTCTTTTGATGGGGGTTTATGCTAAAACCGCTCTTAAAAGGTTTATTGAGTTAGTTCAAAGTGGAAAGATTGGTTTTTTACCTAAAGAGCTTGATGGGTTAAGTGTTGTTTCTATTGAAAATGAGATTTTTGAATTTGTTGTTGGTGGTGGGAGTGAGGAGAAAATGGGGTTGAGATTTGATGAAGTGGGTCGTTTAGTTGAACAATGTTTGGGTGCTGGTGTTGTTGTTAGTTTTGGGGAGATTGAGGTTTTTGTGAAGATGAATGATGATTGTGTTAATGTTGTTCATGTTGGTGATGTTGTTGTTTCACGGTTGACAAGGTTGTTGGAGGTTTATGGTGGGAAGATTTGGTTGGTTGGTGTAGCGGGAAATTGTGAAGTGTTTACTAAATTTCTAAGGTTGTTTCCAACCGTTGATAAAGATTGGGATTTGCATCTTTTGACTGTGACATCTGCTACTCCTTCTATGGAAGGACTATACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGCTTCTTTTCTACACCTTCTGATTTCAGAAATTCCATAAGTTGTACAAATGCCTCCTCATCCTTAACTCTTTGTGACACATGCAATCAAAAGTATGAACAAGAAGTTGCTGATAATGTGAATGTAATAGGACCTTCTACTTCAGCATCAAGAAGTTTACCTTGGTTACAAAAAGTGAATGTAGATTCTGATAATAGAGCATTGAATTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATGCTAAGATCTCTGGATTGCAAAGGAAATGGAATGATATCTGTCAACATCTTCATCAAAACAAATCATTACCTGAAATGAATGTTTCCCAAACATTAACTAGTTTCCAATCTCCATTCCACGAGGGGTTTCGATTCGGTCGAGGAACTAGCAATGTTAATGGAATCCATTGTTCAAATCCTATTCCCTACATGTCTAAAGAGTTACCAACTTCATTTCCATCCAAACAGATGTTACCATTTTCACAACCTTTTGATACTAATCTTAGTGCCAAAGATAAAGCAGTAAATATACCAAATGTTTCAAAATTCGACACACAAAGTCCTCTGCTTGACCACAAGTCATCTTCATCGCTTACACCTGTCACCACAGATTTGGTTTTGGGAACTACGTATACACCGGTTATTCATGAGCCAGATACACCTAAACTAAATGATCATAAGAAGCATCTGCAGCATTTGTCAGATTCTCTTTCGACCGATTTTGATACTGTGAATGAGAGTACTTCAAATCAAATTGCTAGATCGTCTTCGTACTCTGGTCCAAATTCAGACAGTATATTTGAAATGGTTGATTTCAAGTCACTTTACAAACTTCTTACCGAAAAGGTTCCGCTGCAAGATGAGGCAATATATGCTATCATTAGAATTATGACACTTTGTAGATCTGGTGCCAGAAAGCATAGTCAATCGAATTCGAATGTTAGAGCAGACACATGGTTTTCTTTCCTTGGACCAGATAGAGTTGGAAAAAGAAAAATTGCTTCAGCACTTGCAGAAACTCTATTTGGAAGCAAACAAAGCCTAATCTCAGTGGATTTGAGCTCTCAGGAAAGGTTTCAACCATCGAACTCGGTTTTCGAATGTCACGACGTGCTTAGGAGGAAGACAGTTGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCGCGTTCGGTTGTGCTTCTTGAAAATATTGATAAAGCTGATATACTTGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGAAAATTTCCATACTCACATGGAAGGGAAATCAGCATCAATAATTCAATCTTTGTTGTGACCTCTTCAGTGTTAAAAGCTAGCGGCTATTTTGATTCGGAAAAGGAAACTAAAATGTTCAACGAGGAAAGAATTGTTGAAGCTAAAAGATGTCGGATTGAATTATCGCTTGGACAAGCTTCCGAGGATGTGATGAGAAGCGGTAGTACAACTGTGAGGGTTGCAAAGAGAAAAGGGTCATTTCTGAATAAAAGAAAGCTAGTTGAAAGTAGTAATTCCAATGAGAAAGTAACTTGCAAGACAATGAAACACGTAAGAGAGGCGCGATCATATCTTGATTTGAACATGCCTCTAGAGGAGGAAGTTGAGGAGGAAATTGATTATAATGATTGTGAAAGTGATTCAGTAGTTCAAAAACCTGAAGCATGGTTAAATGATTTCCTAGATCAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTATCTTGCTGAGCAAGTAATAGAATGCATTGACAAACAATTTCAAACAACATTTGGATCAAAGTTTGTGCTGGAAATTGATTATGATGTCATGTTACAGATACTCGCAGCTTTTTGGCTATCAGACAAGAAAAAATCAGTTGAGGATTGGATTGAACATGTTCTTGGAAGTAGCTTTGTTGAAGCACAAAAGAAGTATCAGAATGCAGCTGAATATGTCATGAAATTGATTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGGAGTATGCCTTCCAGCTAGAATTAACTTGAAATGA 3234 0.397 MPTPVSTARQCLTDEAARALDDAVSVARRRSHPQTTSLHAISALLSLPSNALRDACARAGTSPYSPRLQFRALELSVGVSLDRLPTSKSAAVSPAGENGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQNQQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPSRFFHRSSPPVFLGNIEPLPERFDENSRRIVEAIAGKKNPLLMGVYAKTALKRFIELVQSGKIGFLPKELDGLSVVSIENEIFEFVVGGGSEEKMGLRFDEVGRLVEQCLGAGVVVSFGEIEVFVKMNDDCVNVVHVGDVVVSRLTRLLEVYGGKIWLVGVAGNCEVFTKFLRLFPTVDKDWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNSISCTNASSSLTLCDTCNQKYEQEVADNVNVIGPSTSASRSLPWLQKVNVDSDNRALNLAKTNEDNTSLNAKISGLQRKWNDICQHLHQNKSLPEMNVSQTLTSFQSPFHEGFRFGRGTSNVNGIHCSNPIPYMSKELPTSFPSKQMLPFSQPFDTNLSAKDKAVNIPNVSKFDTQSPLLDHKSSSSLTPVTTDLVLGTTYTPVIHEPDTPKLNDHKKHLQHLSDSLSTDFDTVNESTSNQIARSSSYSGPNSDSIFEMVDFKSLYKLLTEKVPLQDEAIYAIIRIMTLCRSGARKHSQSNSNVRADTWFSFLGPDRVGKRKIASALAETLFGSKQSLISVDLSSQERFQPSNSVFECHDVLRRKTVVDYIAGELSKKPRSVVLLENIDKADILVQNSLFQAIRTGKFPYSHGREISINNSIFVVTSSVLKASGYFDSEKETKMFNEERIVEAKRCRIELSLGQASEDVMRSGSTTVRVAKRKGSFLNKRKLVESSNSNEKVTCKTMKHVREARSYLDLNMPLEEEVEEEIDYNDCESDSVVQKPEAWLNDFLDQIDGKVVFKPFNFDYLAEQVIECIDKQFQTTFGSKFVLEIDYDVMLQILAAFWLSDKKKSVEDWIEHVLGSSFVEAQKKYQNAAEYVMKLIKCESIFVEEQATGVCLPARINLK 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00947 1077 Gene3D - 661 973 IPR027417 -
Trre5g00947 1077 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1048 - -
Trre5g00947 1077 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 793 811 IPR001270 GO:0005524
Trre5g00947 1077 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 719 737 IPR001270 GO:0005524
Trre5g00947 1077 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 826 840 IPR001270 GO:0005524
Trre5g00947 1077 ProSiteProfiles Clp repeat (R) domain profile. 8 185 IPR004176 -
Trre5g00947 1077 Gene3D - 10 181 IPR036628 -
Trre5g00947 1077 Coils Coil 468 488 - -
Trre5g00947 1077 CDD RecA-like_ClpB_Hsp104-like 670 840 - -
Trre5g00947 1077 SUPERFAMILY Double Clp-N motif 12 125 IPR036628 -
Trre5g00947 1077 Pfam AAA domain (Cdc48 subfamily) 719 841 IPR003959 GO:0005524|GO:0016887
Trre5g00947 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 838 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00947 Trre-Chr5 6528415 6533972 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00947 - - tpra:123913467 1912.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00947 5 6528415 6533972 Trre5g00947 5 6528415 6533972 ECH
Trre5g00947 5 6528415 6533972 Trre5g02095 5 15612301 15616757 ECH
Trre5g00947 5 6528415 6533972 Trre9g03726 9 45651007 45655702 ECH
Trre5g02095 5 15612301 15616757 Trre5g00947 5 6528415 6533972 ECH
Trre5g00947 5 6528415 6533972 Trre9g03726 9 45651007 45655702 PCT