Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01448 ATGATTTTCTTCGGCATTGGTATCATTTTTCATCCATTCGCCGCTACTCGCGCCATTCATTATGATGAAGAAGACGAAGCCGACATTTCAAAAAACTCCGGTTCATGCCTCGCCGGAGTCTCGCCGAAGCTACCTCCACTTCCGCCAAAAATCTCCGTGGAAAAATTTGCTCCGGCGCTTGCACCGGCTGTGATACTTTCCTCGGATGACGAGGAGATTGTCCGAGCGGTGGTATCAGGTTCAATTCCGTCTTACTCGCTTGAATCGAAGCTTGGTGATTGCAAACGTGCGGCGGCGATTCGGAACCTAGCGGTGGAGAGAGTTACCGGAAGGTCACTTGAGGGTTTACCGATGGAAGGTTTTGATTATGATTCTATATTAGGACAGTGTTGTGAAATGCCGATAGGATTTGTTCAGATTCCGGTGGGAGTTGCCGGTCCTTTGTTGCTTGACGGGAAGGAGTACACGGTTCCGATGGCAACAACGGAAGGTTGTTTGGTTGCAAGTACTAACAGAGGCTGTAAAGCTATTTATGTTTCCGGTGGTGCTTCCGCCGTTGTCCTCCGTGACGGAATGACTAGAGCACCAGTTGTTAGATTCAACTCCGCCAAAAGAGCTTCTCAGTTAAAGTTCTATTTAGAAGATCCTCAAAATTTTGATTCCCTCTCTCACACTTTCAACAAGTCAAGTAGATTTGGGAGATTACAGAGTATTAAAGCTACTATGGCAGGAAAGAATTTGTACATTAGATTCACTTGTTCAACCGGTGATGCAATGGGGATGAACATGGTATCAAAAGGTGTTCAAAATGTACTTGATTTTCTTCAAAGTGAATTTCCTGATATGGAAGTCATTGGCATATCAGGAAACTTTTGTTCGGACAAGAAAGCTGCGGCGGTGAATTGGATTGAAGGGAGAGGGAAATCTGTGGTGTGTGAGGCTGTAATTAAGGAAGAGGTGGTTAAGAAAGTGTTGAAGACAAGTGTTGAGTCTTTGGTTGAGCTTAACATGCTCAAAAACCTTACCGGTTCAGCCATGGCTGGTGCTCTTGGTGGATTCAATGCACATGCTAGTAATATTGTTTCTGCTATATACTTGGCTACAGGTCAAGATCCAGCTCAGAATGTTGAGAGTTCTCACTGTATGACTATGATGGAAGCTGTGAATGATGGCAAAGACCTTCATATCTCTGTCACCATGCCTTCCATTGAGGTGGGCACAGTTGGTGGAGGCACACAGCTTGCATCACAATCAGCATGTTTGAATTTACTTGGTGTTAAGGGTGCTAGTAAAGAGTCACCAGGAGCAAATTCAAAGCAACTGGCAACAATAGTAGCTGGTTCAGTCCTTGCCGGGGAGCTCTCCCTGATGTCTGCAATTGCAGCTGGACAACTTGTTAAGAGCCACATGAAATACAACAGGTCTAGTAAAGATGTTACTAAAATTGCTTCATGA 1455 0.4488 MIFFGIGIIFHPFAATRAIHYDEEDEADISKNSGSCLAGVSPKLPPLPPKISVEKFAPALAPAVILSSDDEEIVRAVVSGSIPSYSLESKLGDCKRAAAIRNLAVERVTGRSLEGLPMEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASAVVLRDGMTRAPVVRFNSAKRASQLKFYLEDPQNFDSLSHTFNKSSRFGRLQSIKATMAGKNLYIRFTCSTGDAMGMNMVSKGVQNVLDFLQSEFPDMEVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVESLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCMTMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSKQLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVTKIAS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01448 484 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 459 472 IPR023076 GO:0004420
Trre9g01448 484 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 293 469 - -
Trre9g01448 484 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 191 307 - -
Trre9g01448 484 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 62 463 IPR009029 GO:0015936|GO:0016616
Trre9g01448 484 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 250 264 IPR023076 GO:0004420
Trre9g01448 484 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 191 307 IPR009023 -
Trre9g01448 484 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 66 140 - -
Trre9g01448 484 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 70 474 IPR004554 GO:0004420|GO:0005515|GO:0008299
Trre9g01448 484 CDD HMG-CoA_reductase_classI 71 474 IPR004554 GO:0004420|GO:0005515|GO:0008299
Trre9g01448 484 Pfam Hydroxymethylglutaryl-coenzyme A reductase 98 474 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 57 478 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 70 474 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 405 412 IPR023076 GO:0004420
Trre9g01448 484 Gene3D - 191 307 IPR009023 -
Trre9g01448 484 Gene3D - 141 461 IPR023074 GO:0004420
Trre9g01448 484 Gene3D - 66 140 IPR023282 GO:0004420
Trre9g01448 484 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 288 313 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 130 151 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 393 414 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 157 177 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 248 266 IPR002202 GO:0004420|GO:0015936
Trre9g01448 484 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 339 365 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01448 Trre-Chr9 12384676 12388000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01448 46 480 Lipid Metabolism Gene Families AT1G76490 78.032 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01448 K00021 - gmx:100790033 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04637 9 53444729 53448502 Trre9g01448 9 12384676 12388000 ECH
Trre9g01448 9 12384676 12388000 Trre9g01448 9 12384676 12388000 ECH
Trre9g01448 9 12384676 12388000 Trre15g02477 15 20656323 20659075 PCT