Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04637 ATGGATCTCCATCGCCGGCCGCCGCCGCAAACCACCCCCAACGGCGCCGTTGCGACAACAAACCACCATTCCCGCCGCCTCAAATCACCTTCCCCATCCCCAAAAGCTTCCGACGCTCTCCCTCTACCACTCTACCTCACCAACACAATCTTCTTCACGCTCTTCTTCTCCGTCGCGTACTATCTCCTTCACCGCTGGCGTGACAAGATCCGTAGCTCCACTCCTCTCCATGTCGTTACTCTCTCCGAAATCGCCGCCATTGTTTCCCTCATCGCTTCGTTCATCTACCTCCTCGGTTTCTTCGGTATTGATTTCGTTCAATCGTTTATCTCACGCGCTAACCATGACGGTTGGGATCTCGACGACACAATCACCACAAACCAAACCAGCAATTTCTCCGTTGCAAGTCCCGTCGCCGTTTCAGATCAGTCTCTTCCTAAACTCACCGCACCGAAACCCTCATTCTTCTCCGAAGACGACAATGAAATCGTGAATTCCGTTGTAGAAGGTGAAATACCTTCATACTCGCTTGAATCGCGGCTCGGAGATTGTTTCCGAGCCGCGGCAATTCGGCGCGAGGCTTTACAGAGAACTTCAGGGAGATCATTAGAAGGTTTACCGTTAGAAGGATTTGATTATGAAGCGATATTAGGGCAGTGTTGTGAAATGCCGGTAGGGTTTGTTCAGATTCCGGTAGGAGTGGCGGGACCGTTGTTGTTAGATGGATTTGAATATACAGTTCCGATGGCGACTACTGAAGGGTGTTTGGTTGCTAGTACTAATAGAGGGTGTAAAGCTATATATGCTTCTGGTGGTGCTGACAGTGTTGTTTTGAGAGATGCTATGTCTAGAGCACCTGTTGTTAGGTTTTCAACTGCTAAAAGAGCTTCTCAGTTGAAATTCTTCTTGGAAGATCCTCTTAATGCTGATACTTTGGCCGTTGTTTTCAATAGGTCAAGTAGATTTGCCAGGCTTCAAGGTATTCAGTGTGCTATGGCTGGGAAGAATGTTTATATGAGATTTACCTGCAGTACAGGTGATGCCATGGGGATGAACATGGTCTCCAAAGGGGTGCAAAATGTTCTTGATTTCCTTCAAAATGATTTCCCTGACATGGATGTTATTGGCATCTCTGGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTTAATTGGATTGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATTATCAAAGAAGAGGTGGTGAAGAAGGTATTGAAGACCAGTGTTTCTGCTTTGGTGGAGCTCAACATGCTCAAAAACCTTGCTGGTTCTGCTATTGCGGGCACTCTTGGTGGATTCAATGCTCATGCTAGCAACATTGTTTCTGCAATTTTTATAGCCACAGGTCAAGATCCAGCTCAAAATGTTGAAAGTTCCCATTGCATAACAATGATGGAGGCCGTAAATGATGGGAGAGACCTCCATATCTCGGTGACCATGCCTTCCATTGAGGTGGGTACAGTAGGGGGTGGGACTCAACTTGCATCTCAATCTGCTTGCTTGAATATGCTTGGTGTAAAGGGTGCAAGCAAGGAGTCACCAGGATCAAACTCGAGACTCCTGGCAACCATTGTTGCTGGAGCTGTCTTAGCAGGCGAGCTGTCTCTGATGTCTGCCATTGCTGCAGGGCAACTCGTCAACAGCCACATGAAATACAACAGATCAAGCAAAGATGTAACTAAACTATCATCTCGAGGGTGA 1731 0.472 MDLHRRPPPQTTPNGAVATTNHHSRRLKSPSPSPKASDALPLPLYLTNTIFFTLFFSVAYYLLHRWRDKIRSSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRANHDGWDLDDTITTNQTSNFSVASPVAVSDQSLPKLTAPKPSFFSEDDNEIVNSVVEGEIPSYSLESRLGDCFRAAAIRREALQRTSGRSLEGLPLEGFDYEAILGQCCEMPVGFVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGADSVVLRDAMSRAPVVRFSTAKRASQLKFFLEDPLNADTLAVVFNRSSRFARLQGIQCAMAGKNVYMRFTCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTSVSALVELNMLKNLAGSAIAGTLGGFNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQSACLNMLGVKGASKESPGSNSRLLATIVAGAVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVTKLSSRG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04637 576 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 549 562 IPR023076 GO:0004420
Trre9g04637 576 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 340 354 IPR023076 GO:0004420
Trre9g04637 576 CDD HMG-CoA_reductase_classI 161 564 IPR004554 GO:0004420|GO:0005515|GO:0008299
Trre9g04637 576 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 160 564 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 Gene3D - 231 559 IPR023074 GO:0004420
Trre9g04637 576 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 149 553 IPR009029 GO:0015936|GO:0016616
Trre9g04637 576 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 160 564 IPR004554 GO:0004420|GO:0005515|GO:0008299
Trre9g04637 576 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 281 397 - -
Trre9g04637 576 Gene3D - 281 397 IPR009023 -
Trre9g04637 576 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 27 568 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 495 502 IPR023076 GO:0004420
Trre9g04637 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 378 403 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 483 504 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 247 267 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 429 455 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 220 241 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 338 356 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 MobiDBLite consensus disorder prediction 1 36 - -
Trre9g04637 576 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 156 230 - -
Trre9g04637 576 Gene3D - 148 230 IPR023282 GO:0004420
Trre9g04637 576 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 386 559 - -
Trre9g04637 576 Pfam Hydroxymethylglutaryl-coenzyme A reductase 188 564 IPR002202 GO:0004420|GO:0015936
Trre9g04637 576 MobiDBLite consensus disorder prediction 12 31 - -
Trre9g04637 576 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 282 397 IPR009023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04637 Trre-Chr9 53444729 53448502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04637 1 570 Lipid Metabolism Gene Families AT1G76490 75.685 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04637 K00021 - gmx:100784330 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04637 9 53444729 53448502 Trre9g01448 9 12384676 12388000 ECH
Trre9g04637 9 53444729 53448502 Trre9g04637 9 53444729 53448502 ECH