Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02477 ATGGAAATTCGTCGGAGACAATCTTCACCGACGGCTGTTCCTCCCGCCGAACATCTCAAAGCTCAGAAGCTTTCAACTACCGAATCACAGACCGTTTCTCTCTGCGTCGCTAACGCTGTTTTCTTCGGTTTATTCTTCTCCGTCGCGTATTTTCTTCTCCACCGTTGGCGTGAGAAGATAAGAACCTCCACACCTCTTCATGTCGTCACGGCATCAGAAACCGCCGCCATTGTTTCTCTTGTTGCCTCCGCTGTTTATCTTCTAGGTTTCTTCGGTATCGGATCTCGTACTTCCTTCCCCGATGATCTCTCCGACGAAGAGATCCTCGCGAAAGAAGACTCACGGAAGCCAGGACCGTGTCCCGCCGCACTTGTCGACACCGACGTGAAACCGGCGCCAGCAATTGTTGCTCCACCGCCGAAGATCCAAAACGTTGCACCGGTGAATCTCTCAGAGGAAGACGAGGAAATAGTAAAATCGGTTGTTTCCGGTTCAATTCCATCGTATTCCTTAGAATCTAGACTTGCTGATTGCCGGAAAGCGGCGGCCATTCGACGTTCAGCGGTTCAGATGATAACTGGAAAATCGTTGGAAGGTTTACCGTTGGAAGGTTTTGATTACGATTCGATATTGGGACAATGTTGTGAGATGCCGATAGGGTTTGTTCAGATTCCGGTTGGTGTTGCGGGTCCATTGTTGTTAGATGGAGTTGAGTACACTGTACCAATGGCTACAACTGAGGGTTGTTTGGTTGCAAGTACCAATAGAGGGTGTAAAGCTATTTATGCTTCTGGTGGAGCTTCTTCGGTTTTGCTTAGAGATGGAATGACTAGAGCACCTGTTGTTAGGTTTTCGTCTGCGAAAAGAGCTGCTCAGTTGAAGTTTTTCTTGGAAGATACGCTTAATTTTGATGCACTTGCTGTCACTTTCAACAAGTCAAGCAGATTCGCTAGATTGCAGAGCATTCAACCCAATATTGCTGGCAAGAATTTGTACATTAGATTTCGTTGCAGTACAGGTGATGCCATGGGGATGAACATGGTATCGAAAGGAGTTCAAAATGTCCTTGATTTTCTTCAAAGTGACTTCCCTGACATGGATGTCATTGGAATATCTGGAAATTTCTGTTCCGACAAGAAAGCGTCGGCTGTGAACTGGATTGAAGGGCGTGGTAAGTCTGTGGTGTGTGAGGCTGTGATTAAGGAAGAAGTGGTTAAGAAAGTGTTGAAGACTAATGTAGAGGCCTTGGTTGAGCTTAACATGCTTAAGAACCTAACTGGCTCAGCTATTGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCCAGCAATATTGTCTCTGCTATCTACATAGCCACTGGTCAAGATCCTGCTCAGAATGTGGAAAGTTCTCACTGTATTACCATGATGGAACCTGTGAATGATGGCAAGGACCTTCACATTTCTGTAACCATGCCTTCCATTGAGGTTGGTACTGTGGGAGGAGGAACACAACTCGCATCACAGTCAGCTTGTCTAAATTTACTTGGTGTTAAAGGTGCCAGCAAAGATTCACCAGGTGCAAATTCTAGGCTACTGGCCACCATTGTTGCCGGTTCAGTCCTCGCCGGCGAGCTATCGCTCATGTCTGCAATTGCAGCTGGGCAACTAGTCAAGAGTCACATGAAATACAACAGATCTAGCAAGGATATCACCAAAATAGTCTCATGA 1707 0.4651 MEIRRRQSSPTAVPPAEHLKAQKLSTTESQTVSLCVANAVFFGLFFSVAYFLLHRWREKIRTSTPLHVVTASETAAIVSLVASAVYLLGFFGIGSRTSFPDDLSDEEILAKEDSRKPGPCPAALVDTDVKPAPAIVAPPPKIQNVAPVNLSEEDEEIVKSVVSGSIPSYSLESRLADCRKAAAIRRSAVQMITGKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGVEYTVPMATTEGCLVASTNRGCKAIYASGGASSVLLRDGMTRAPVVRFSSAKRAAQLKFFLEDTLNFDALAVTFNKSSRFARLQSIQPNIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKASAVNWIEGRGKSVVCEAVIKEEVVKKVLKTNVEALVELNMLKNLTGSAIAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEPVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDITKIVS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02477 568 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 19 562 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 489 496 IPR023076 GO:0004420
Trre15g02477 568 Gene3D - 150 224 IPR023282 GO:0004420
Trre15g02477 568 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 154 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Trre15g02477 568 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 275 391 IPR009023 -
Trre15g02477 568 Gene3D - 225 553 IPR023074 GO:0004420
Trre15g02477 568 Gene3D - 275 391 IPR009023 -
Trre15g02477 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 241 261 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 332 350 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 214 235 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 372 397 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 423 449 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 477 498 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 149 547 IPR009029 GO:0015936|GO:0016616
Trre15g02477 568 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 154 558 IPR002202 GO:0004420|GO:0015936
Trre15g02477 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 275 391 - -
Trre15g02477 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 543 556 IPR023076 GO:0004420
Trre15g02477 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 150 224 - -
Trre15g02477 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 334 348 IPR023076 GO:0004420
Trre15g02477 568 CDD HMG-CoA_reductase_classI 155 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Trre15g02477 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 378 553 - -
Trre15g02477 568 Pfam Hydroxymethylglutaryl-coenzyme A reductase 182 558 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02477 Trre-Chr15 20656323 20659075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02477 4 564 Lipid Metabolism Gene Families AT1G76490 70.996 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02477 K00021 - gmx:100811237 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02477 15 20656323 20659075 Trre15g02477 15 20656323 20659075 ECH
Trre9g01448 9 12384676 12388000 Trre15g02477 15 20656323 20659075 PCT