Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01440 ATGATGGAGGTTGTGATTGTTGCTGTTGCTGCTACACTTGGGAATCTACTTATTGGGTGGGATAGTTCAACCATTGCAGGGGGTGTGACATACATCAAACAAGAATTTGATTTGGAAAAGGATCCAACACTTGAAGGGTTAATTGTGTCAATGTCTTTTATAACCGGAACTGTTGTGACCATATTTTCTGGAACAATCTCGGATATGGTTGGAAGACGACCTATGTTGATAACATCGTCTGTTATGTTTATCATTAGTGGTTTGGTAATGTTGTGGGCACCTACTGTTATTATTGTACTTTTGTCGAGGATAATCGCTGGCGTTGCCATTGCTCTTGCTGTTACTTTTAATCCTCTTTACATATCCGAGATAGCGCCACCTGATATAAGAGGACAATTGAACACGCTTACTCAGTTTGCTTGTTCTGGTGGAATGTTTTTGGCTTACATTCTTGTTTTCTCAATGTCCTTGTTGCCCTCGCCTAGTTGGAGAGTTATGCTTAGTATTATCTCTATTCCTTCTGTTGCTTATTTTTTGCTGGCTGTGTTTTATCTCCCCGAATCTCCTCGGTGGCTTGTTAGCAAAGGTCGAATTCATGAGGCTGAGAAAGTTTTGCAAAGACTTCGCCGCGTCGAAGATGTCTCAGGGGAGTTGGCTTTACTCGCGGAGGGTCTCAGTCCTGGGGGTGAAGACATAGCCATAGAAGAATACGTAGTTGCCCCAGCTAGTGAGATCCTTGTCAACCAAGAAGCAGGAAAAGATTATATAAAATTATATGGACCTAATGAGGGAGTTACAATGATTGCTCAACCTGTGAATGGACAAGGTAGCATGCTATCGCGCAGCATGTTGTCTCAGCACGGAAGCTATCCATCGCGCAGTATGTTGTCTCAGCAGGGAAGCTTTGCATCTCAGGCAGCTGCTAGTCTTAAGGATCCTATTGTCAACTTATTTGGAAGTTTACACGAGAGTACTCTCATCGATAACGGTGGTTCACGCAGCATGCTTATTAACAAATCTAATAGTATCTTTAGCATGGGAGATCCAGAGGCTAGTCCCTTCGGTACAAGCGACAACCTGCGTGCTCCGTTGATGTCATTTCAAGGTGGTGCTGATAGGGGTTTTGGATCTAAGGACATGTTAGGTATGACAAGCAACAGCAGTTTGGTTCATGGAAATGATGTCGAAACACCGAGAAATAGAGACATCGGTGGAGGTTGGCAATTGGTATACAAGTCAACTGACGATGCCATGGGCGGGAAAAGAGAAGGACTCCAAAGGGTATATTTGCATGCAGATCCTTCTGCTGCTGCAGTGTCTCAGTCTCCGCATGTTTCATTTGTTTCAACTTCTGGCTATGACTTAGACGGTGGCGAAGTTTTTCAGGCTGCTGGTATTGTCAGCCGGTCAGTTCTTGGAACTAGTGATGCGTTGACTATTCCAGAAGCCGCTGCGAAAGGTCCAAAATGGAAAGCTCTTCTAGAACCTGGAGTCAAGCGTGCTTTAATTGTCGGAATAGGACTTCAAATTCTTCAACAGGCTGCTGGCATAAATGGATTCCTATACTATGCTCCTCAGATTCTCGAGCAAGCTGGAGTAGGGGCCCTTCTATCAAATTTAGGCCTCAGTTCAATATCTGCTTCTTTTCTCGTAAATATCATTACAACATTCTGTATGCTTCCTTGTATAGCTATCGCCATAAGACTCATGGATGTTGCTGGCCGAAGGTCAATCATGCTGTACACAATACCTATTTTGATAGTGTGTCTCCTATTACTAGTACTGAAACAGTTTTTCCAACTCAGCTCTATCCTAGATGCGGGAATTTCAGCTATCAGTGTCATTGTCTACGAAAGCGTTTTCTGTATGGGTCTCGGTGTTATTCCAAACATCATATGTGCAGAAATCTTCCCAACTAGTGTCCGTGGAATCTGCATTTCGCTTACTTCCCTTACATATTGGGTTTGTACATTGGCCGTCACTTTGTCATTCCCTTATTTGCTCCAACTTCTCGGTCTTAGTGGTGTCTTCGCTTTATTTGTTGGTGGTTGCGTCATTTCATGGATATTTGTCTACTTGAAAGTTCCCGAAACAAAGGGTATGCCTTTGGAAGTTATCATCGAGTTTTTTGCTATTGGTGCAAAGCCTGGTACTGATCCTTCAGAAATTGGTATCAAAGACTAA 2184 0.4327 MMEVVIVAVAATLGNLLIGWDSSTIAGGVTYIKQEFDLEKDPTLEGLIVSMSFITGTVVTIFSGTISDMVGRRPMLITSSVMFIISGLVMLWAPTVIIVLLSRIIAGVAIALAVTFNPLYISEIAPPDIRGQLNTLTQFACSGGMFLAYILVFSMSLLPSPSWRVMLSIISIPSVAYFLLAVFYLPESPRWLVSKGRIHEAEKVLQRLRRVEDVSGELALLAEGLSPGGEDIAIEEYVVAPASEILVNQEAGKDYIKLYGPNEGVTMIAQPVNGQGSMLSRSMLSQHGSYPSRSMLSQQGSFASQAAASLKDPIVNLFGSLHESTLIDNGGSRSMLINKSNSIFSMGDPEASPFGTSDNLRAPLMSFQGGADRGFGSKDMLGMTSNSSLVHGNDVETPRNRDIGGGWQLVYKSTDDAMGGKREGLQRVYLHADPSAAAVSQSPHVSFVSTSGYDLDGGEVFQAAGIVSRSVLGTSDALTIPEAAAKGPKWKALLEPGVKRALIVGIGLQILQQAAGINGFLYYAPQILEQAGVGALLSNLGLSSISASFLVNIITTFCMLPCIAIAIRLMDVAGRRSIMLYTIPILIVCLLLLVLKQFFQLSSILDAGISAISVIVYESVFCMGLGVIPNIICAEIFPTSVRGICISLTSLTYWVCTLAVTLSFPYLLQLLGLSGVFALFVGGCVISWIFVYLKVPETKGMPLEVIIEFFAIGAKPGTDPSEIGIKD 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01440 727 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 699 IPR020846 GO:0022857
Trre9g01440 727 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 PRINTS Sugar transporter signature 611 632 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 PRINTS Sugar transporter signature 634 646 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 PRINTS Sugar transporter signature 512 522 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 Gene3D MFS general substrate transporter like domains 472 712 IPR036259 -
Trre9g01440 727 FunFam Monosaccharide-sensing protein 3 469 712 - -
Trre9g01440 727 SUPERFAMILY MFS general substrate transporter 9 704 IPR036259 -
Trre9g01440 727 ProSitePatterns Sugar transport proteins signature 1. 566 582 IPR005829 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 Gene3D MFS general substrate transporter like domains 2 269 IPR036259 -
Trre9g01440 727 FunFam Monosaccharide-sensing protein 3 2 249 - -
Trre9g01440 727 Pfam Sugar (and other) transporter 488 707 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 Pfam Sugar (and other) transporter 7 219 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre9g01440 727 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 4 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01440 Trre-Chr9 12291870 12295283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01440 51 715 Organic Solute Cotransporters AT3G51490 50.431 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01440 - - gmx:100789093 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01440 9 12291870 12295283 Trre9g01440 9 12291870 12295283 ECH
Trre5g06000 5 59241650 59246392 Trre9g01440 9 12291870 12295283 ECH
Trre15g02489 15 20781925 20786209 Trre9g01440 9 12291870 12295283 ECH
Trre9g01440 9 12291870 12295283 Trre15g02489 15 20781925 20786209 PCT