Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01919 ATGGCGAACACAACGAGCAATAGTAGAGGATCAAGATGGTCCCTCAAGGGAACTACTGCTCTAGTTACCGGCGGAACACGTGGAATCGGGCATGCTGTGGTGGAGGAACTGGCCGAGTTTGGTGCCACGGTGTACACTTGTTCTAGAAACGAAGAAGAGCTTAATAAATGCTTAAACGAGTGGAAAGATAAGGGTTTTTCGATTTATGGATTGGTCTGCGATGCGTCCTCTCCTTCTCAAAGAGAGGAGCTTATTCAACAAGTGGCTTCTGCGTTCAACGGCAAGCTCAACATACTTGTAAATAATGCTGGTACAAATGTGAGGAAGCCAATGATTGAGTTTACAACAGAAGATTATTCAAAAGTGATGAATACAAACTTAGATTCTGCATTTCATCTATGCCAACTTGCTTATCCTCTTCTTAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCCTCTGTTGCATCTCTCACAAGTGTCGGTACGGCAACCATCTATGCAGTGAGTAAAGCTGCAATCAATCAGCTAACAAAAAATCTTGCTTGTGAATGGGCTAAAGACAATATAAGAAGCAATTGTGTTGCACCTTGGTATACAAAAACATCACTTGTGAAAGAATTTATTGCCAACAAAGAATTTGTGAATGAAATATTGTCTCGAACACCGATACAACGGATAGCAGAAACACATGAAGTGTCTTCTTTGGTGACTTTCCTTTGTTTGCCAGCTGCTTCCTACATCACTGGACAAACTATTTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCAAGCATTAGGATTAACTAA 816 0.4069 MANTTSNSRGSRWSLKGTTALVTGGTRGIGHAVVEELAEFGATVYTCSRNEEELNKCLNEWKDKGFSIYGLVCDASSPSQREELIQQVASAFNGKLNILVNNAGTNVRKPMIEFTTEDYSKVMNTNLDSAFHLCQLAYPLLKESGNGSIVFISSVASLTSVGTATIYAVSKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTSLVKEFIANKEFVNEILSRTPIQRIAETHEVSSLVTFLCLPAASYITGQTISVDGGFTVNGFQPSIRIN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01919 271 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
Trre5g01919 271 Gene3D - 8 263 - -
Trre5g01919 271 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Trre5g01919 271 FunFam Short-chain dehydrogenase reductase 4 265 - -
Trre5g01919 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
Trre5g01919 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Trre5g01919 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Trre5g01919 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Trre5g01919 271 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Trre5g01919 271 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Trre5g01919 271 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Trre5g01919 271 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Trre5g01919 271 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Trre5g01919 271 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Trre5g01919 271 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01919 Trre-Chr5 14298774 14300002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01919 1 264 Miscellaneous Gene Families AT2G29150 59.623 1.56e-111 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01919 K08081 - gmx:100819646 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01938 5 14429472 14432026 Trre5g01919 5 14298774 14300002 ECH
Trre13g01411 13 11430749 11434456 Trre5g01919 5 14298774 14300002 ECH
Trre5g01919 5 14298774 14300002 Trre5g01919 5 14298774 14300002 ECH