Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01938 ATGGCAGTGGCTGAAGAGTGCAGTTCCAGCAGAGCCTCAAGATGGTCCCTCAAAGGAATGACTGCTCTTGTCACTGGTGGAACTCGTGGGATTGGACATGCCATAATTGAGGATTTATGTGGGTTTGGTGCCATCGTCCACACTTGTTCCAGAAACCAAACAGAACTCAATAATTGTTTGGATCAATGGCGTAGTAAAGGCTTTTTGGTTTCTGGATCTGTTTGTGATGTGTCATCTCAAGATCAAAGGGAGAAGCTAATTCAAGAAGTTACCTCAATCTTCAATGGCAAACTTCACATTTATGTGAACAATGTTGGAGCAAACTTTAGGAAACCAACCATTGAGTACACTGCTGAAGTATATTCAGAAATAATGACAATTAATTTAGATTCTTCATATCATTTGTGCCAACTTACACATCCTCTTCTAAAGGCATCTGGAATGGGAAGCATTGTATTCATTTCATCTATTGCTGGTGTGGTGAGCTTAGGTACAGGATCAGTCTATGCAGCAAGTAAAGCTGCAATCAATCAGCTTACAAAAAATTTGGCTTGTGAATGGGCAAAAGATGGCATAAGGAGCAATTGTGTTGTTCCTGCTACCACTAATACACCACTTGTTGAACATCTACTTCGCAACAAGCAGTATGTAGACGAAATGTTGTCTCGAACTCCTCTTGGACGTATCGCTGAAGCTCAAGAGATTTCATCCTTGGTGTCTTTCCTTTGTCTTCCGGCTGCGTCTTACATCACAGGACAGGTTATTTGTGTTGATGGAGGATTGACAGTGAATGGATTTCAGCCTAGTATGAGAATAACATAA 822 0.4112 MAVAEECSSSRASRWSLKGMTALVTGGTRGIGHAIIEDLCGFGAIVHTCSRNQTELNNCLDQWRSKGFLVSGSVCDVSSQDQREKLIQEVTSIFNGKLHIYVNNVGANFRKPTIEYTAEVYSEIMTINLDSSYHLCQLTHPLLKASGMGSIVFISSIAGVVSLGTGSVYAASKAAINQLTKNLACEWAKDGIRSNCVVPATTNTPLVEHLLRNKQYVDEMLSRTPLGRIAEAQEISSLVSFLCLPAASYITGQVICVDGGLTVNGFQPSMRIT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01938 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Trre5g01938 273 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Trre5g01938 273 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Trre5g01938 273 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Trre5g01938 273 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Trre5g01938 273 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Trre5g01938 273 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Trre5g01938 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Trre5g01938 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Trre5g01938 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Trre5g01938 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 264 IPR036291 -
Trre5g01938 273 Pfam Enoyl-(Acyl carrier protein) reductase 28 262 - -
Trre5g01938 273 Gene3D - 2 266 - -
Trre5g01938 273 FunFam Short-chain dehydrogenase reductase 7 267 - -
Trre5g01938 273 PANTHER TROPINONE REDUCTASE 14 265 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01938 Trre-Chr5 14429472 14432026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01938 14 268 Miscellaneous Gene Families AT2G29290 61.868 3.21e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01938 K08081 - gmx:100775806 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01938 5 14429472 14432026 Trre5g01919 5 14298774 14300002 ECH
Trre5g01938 5 14429472 14432026 Trre5g01938 5 14429472 14432026 ECH