Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01411 ATGGCAGAAACAAAGTTGAGCAGCTTCAAAGATAAAAGATGGTCACTCCAAGGCATGACAGCTCTAGTGACTGGTGGAACCCGAGGCATAGGGCATGCAATTGTGGAAGAGTTAGCAGAATTTGGAGCAAGAGTGCATATATGTGCAAGAAATCAAGAAGATATTAATAAATGTTTGGAAGAATGGAAAAGCAAAGGATTTTGTGTGACAGGGTCAACTTGTGATTTACTATATCGTGACCAACGTGAAAAATTAATGGAAACTGTTGCTTCAATCTTCGAAGGAAAACTCAATATTCTAGTAAACAATGCTGCAATATTTACTACTAAATTTATCTTAGATTACACGGATGAAGATATAACAACTACACTTGGTACCAATTTTGTGTCTAGTTACCATTTGTGTCAACTTGCACATCCACTTCTAAAACAATCTGGATATGGGAGTGTAGTATTCATATCCTCAGTTTCAAGTCTCAAAGCTTTGCCTTTCTGTTCTGCCTATGCGGCCTCTAAAGGAGCTTTGAACCAGTTCAGTAAGAACATAGCATTGGAATGGGCAAAGGATAATATTCGCGCTAATGTTGTGGCACCTGGACCAGTGATGACCATACTTTTGGAGAATGCTATGAAATTAACTGTCGGAGTGGATGATGCTATAAAAGGTATGGTGTCACAAACGCCTGCTGGCCGTATTGGAGAAACCAAAGATACGTCAGGATTGGTTGCTTTTCTTTGTCTTCCAGCTTCTTCGCACATAACTGGACAAATTATAGCTGTAGATGGAGGTTTCACTATTTAA 801 0.392 MAETKLSSFKDKRWSLQGMTALVTGGTRGIGHAIVEELAEFGARVHICARNQEDINKCLEEWKSKGFCVTGSTCDLLYRDQREKLMETVASIFEGKLNILVNNAAIFTTKFILDYTDEDITTTLGTNFVSSYHLCQLAHPLLKQSGYGSVVFISSVSSLKALPFCSAYAASKGALNQFSKNIALEWAKDNIRANVVAPGPVMTILLENAMKLTVGVDDAIKGMVSQTPAGRIGETKDTSGLVAFLCLPASSHITGQIIAVDGGFTI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01411 266 PANTHER TROPINONE REDUCTASE 12 266 IPR045000 GO:0016491
Trre13g01411 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 266 IPR036291 -
Trre13g01411 266 Gene3D - 3 266 - -
Trre13g01411 266 FunFam Short-chain dehydrogenase reductase 5 266 - -
Trre13g01411 266 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Trre13g01411 266 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Trre13g01411 266 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Trre13g01411 266 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Trre13g01411 266 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Trre13g01411 266 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Trre13g01411 266 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Trre13g01411 266 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 202 - -
Trre13g01411 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Trre13g01411 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Trre13g01411 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Trre13g01411 266 Pfam Enoyl-(Acyl carrier protein) reductase 27 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01411 Trre-Chr13 11430749 11434456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01411 11 266 Miscellaneous Gene Families AT2G29290 53.516 7.07e-99 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01411 K08081 - tpra:123892393 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01411 13 11430749 11434456 Trre13g01411 13 11430749 11434456 ECH
Trre13g01411 13 11430749 11434456 Trre5g01919 5 14298774 14300002 ECH