Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04606 ATGGAGAAGGTGATGAGGTTGGCTACAGAAAAGGGTGTGGTGATTTTCACAAAAAGTTCTTGTTGTCTATGTTATGCAGTGAATGTTTTGTTTCAAGAAATTGGAGTGTACCCTGTGGTACATGAAATTGACAAAGATCCTGATGGCAAAGAAATGGAGAAAGCTATAACAAAGTTGGGTTGTAATGCACCTGTTCCTGCAGTATTCATAGGAGGAAAACTTGTGGGGTCCACTAATGAAGTAATGTCCCTCCACTTAAGTGGTTCACTCATTCCACTATTGAGGCCATATACTAGAATGTAA 303 0.396 MEKVMRLATEKGVVIFTKSSCCLCYAVNVLFQEIGVYPVVHEIDKDPDGKEMEKAITKLGCNAPVPAVFIGGKLVGSTNEVMSLHLSGSLIPLLRPYTRM 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04606 100 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Trre1g04606 100 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Trre1g04606 100 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Trre1g04606 100 PANTHER GLUTAREDOXIN 1 95 IPR011905 -
Trre1g04606 100 NCBIfam glutaredoxin-like family 4 96 IPR011905 -
Trre1g04606 100 Gene3D Glutaredoxin 1 99 - -
Trre1g04606 100 Pfam Glutaredoxin 13 75 IPR002109 -
Trre1g04606 100 ProSiteProfiles Glutaredoxin domain profile. 1 100 - -
Trre1g04606 100 CDD GRX_GRXh_1_2_like 13 93 - -
Trre1g04606 100 FunFam Glutaredoxin family protein 1 100 - -
Trre1g04606 100 SUPERFAMILY Thioredoxin-like 1 96 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04606 Trre-Chr1 52145432 52145734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04606 1 95 Miscellaneous Gene Families AT4G15670 51.579 2.55e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04606 K03676 - gmx:100500442 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04606 1 52145432 52145734 Trre1g04606 1 52145432 52145734 ECH
Trre13g04682 13 53908806 53909111 Trre1g04606 1 52145432 52145734 PCT
Trre1g04606 1 52145432 52145734 Trre13g04683 13 53911370 53911681 PCT