Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04683 ATGGATAGAGTAAAGGATTTGGCATCAAAGAAAGCAGCAGTTATATTTACAAAGAGTTCATGTTACATGTGTCATAGCATCAAGCAACTTTTTTATGAACTTGGAGCAAGTCCTGCAGTATATGAATTAGACAATGATTCATATGGTAGAGAAATGGAATGGGCTTTAAGGAGTACTTTTGGATGTAACCCTTCAGTTCCAGCAGTTTTTATAGGTGGAAAATTTGTAGGATCTTCAAAAGATATGATATCTCTTCATGTTGATGGTTCTCTTAAACAATTGCTTATGGATGCAAAAGCCATTTGGTTTTAG 312 0.3462 MDRVKDLASKKAAVIFTKSSCYMCHSIKQLFYELGASPAVYELDNDSYGREMEWALRSTFGCNPSVPAVFIGGKFVGSSKDMISLHVDGSLKQLLMDAKAIWF 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04683 103 Gene3D Glutaredoxin 1 101 - -
Trre13g04683 103 PRINTS Glutaredoxin signature 59 72 IPR014025 -
Trre13g04683 103 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Trre13g04683 103 PRINTS Glutaredoxin signature 73 86 IPR014025 -
Trre13g04683 103 ProSiteProfiles Glutaredoxin domain profile. 1 102 - -
Trre13g04683 103 NCBIfam glutaredoxin-like family 4 102 IPR011905 -
Trre13g04683 103 Pfam Glutaredoxin 14 76 IPR002109 -
Trre13g04683 103 SUPERFAMILY Thioredoxin-like 1 102 IPR036249 -
Trre13g04683 103 PANTHER GLUTAREDOXIN 1 102 IPR011905 -
Trre13g04683 103 CDD GRX_GRXh_1_2_like 12 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04683 Trre-Chr13 53911370 53911681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04683 1 103 Miscellaneous Gene Families AT4G15700 47.573 2.31e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04683 K03676 - gmx:100788094 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04683 13 53911370 53911681 Trre13g04683 13 53911370 53911681 ECH
Trre13g04683 13 53911370 53911681 Trre1g04605 1 52138542 52138844 PCT
Trre1g04606 1 52145432 52145734 Trre13g04683 13 53911370 53911681 PCT