Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04282 ATGGCTCCTGATCTCATAACCGCTGCAACCAACATCACTAACGCTCAAGGTAAGGCCACAAAACGCGCTTTTGTGACCTTCCTTGCCGGAAACGGTGACTATGTTAAAGGTGTCGTTGGTTTAGCCAAAGGCCTTCGTAAGGTTAAAACCATGTACCCTCTAGTGGTTGCAGTTTTGCCCGATGTTCCGGTCGAACACCGGAATATTCTCACTTCTCAAGGTTGCATTGTTAGAGAGATTGAACCTGTTTACCCTCCTGAGAATCAAACTCAATTTGCTATGGCTTATTATGTCATCAACTACTCCAAGCTACGTATCTGGGCTTTTGAGGATTATGACAAGATGATTTACCTTGATGGTGACATTCAAGTTTTTCAAAACATTGATCATTTATTTGACTTGCCAAATAACTATTTCTATGCTGTAAAAGACTGTTTTTGTGAGGCCTCTTGGCGTCACACTAAGCAATATGAAATCGGTTACTGTCAGCAGTGTCCTGACAAAGTTCAATGGCCAACAAATTTTGGGCCCAAACCACCTCTTTACTTCAATGCTGGCATGTTTGTTTATGAACCTAATATGACAACTTATCATGATCTCCTTCAAAAACTTCAAGTCACTAAGCCAACTTCCTTTGCTGAACAGGATTTTTTGAACATGTACTTCAAAGACAAATACAAGCCAATTCCTAATGTTTATAATCTTGTGCTGGCCATGTTATGGCGTCACCCTGAGAATGTTGAGCTTGAAAAAGTTAAAGTTGTTCATTACTGTGCAGCTGGGTCTAAGCCTTGGAGGTATACTGGGGTGGAAGAAAATATGCAAAGAGAGGATATTAAAATGTTGGTGAAGAAATGGTGGGATGTATATGAAGATGAGAGTTTAGATTACAAGGAACCAATTAATGCAAATAAGTTAACATCAGCAATTTTGGATGCTAGTGGTATCAAGTTTGTACCTGCTCCATCTGCTGCTTAA 978 0.3998 MAPDLITAATNITNAQGKATKRAFVTFLAGNGDYVKGVVGLAKGLRKVKTMYPLVVAVLPDVPVEHRNILTSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWAFEDYDKMIYLDGDIQVFQNIDHLFDLPNNYFYAVKDCFCEASWRHTKQYEIGYCQQCPDKVQWPTNFGPKPPLYFNAGMFVYEPNMTTYHDLLQKLQVTKPTSFAEQDFLNMYFKDKYKPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGVEENMQREDIKMLVKKWWDVYEDESLDYKEPINANKLTSAILDASGIKFVPAPSAA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04282 325 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 19 296 IPR029044 -
Trre1g04282 325 PANTHER GLYCOGENIN SUBFAMILY MEMBER 11 295 - -
Trre1g04282 325 SUPERFAMILY Nucleotide-diphospho-sugar transferases 25 299 IPR029044 -
Trre1g04282 325 Pfam Glycosyl transferase family 8 26 268 IPR002495 GO:0016757
Trre1g04282 325 FunFam Hexosyltransferase 20 298 - -
Trre1g04282 325 CDD GT8_Glycogenin 22 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04282 Trre-Chr1 48474851 48476287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04282 1 325 Glycosyltransferase AT1G56600 70.746 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04282 K18819 - gmx:548050 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04282 1 48474851 48476287 Trre1g04282 1 48474851 48476287 ECH
Trre13g04856 13 55065382 55067842 Trre1g04282 1 48474851 48476287 ECH
Trre13g04986 13 55998705 56001064 Trre1g04282 1 48474851 48476287 PCT