Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04856 ATGGCACCGGATCTTGTTCCAACCGCTACAAAATCAGTTACCGGTTTCACGAAATCCGTTACAATACCGAAACGTGCTTACGTAACGTTTCTTGCCGGTAACGGTGACTACGCGAAAGGTGTAATTGGTTTAGCGAAAGGTTTGCGGAAAGTGAAGACAGCGTATCCGCTGGTTGTGGCGGTGCTTCCAGACGTACCGGAGGAACACCGTGAGATGTTGGAATCTCAGGGATGTATTGTTCGTGAGATTGAACCGGTTTACCCACCCGAAAATCAGACTCAGTTTGCTATGGCTTATTACGTCATTAATTATTCAAAGCTCCGTATATGGGAGTTTGTGGAATACAACAAGATGATATACTTGGACGGAGACATTCAAGTCTATGAAAACATTGATCATCTATTTGATCTACCAGATGGTTATTTCTATGGTGTGATGGATTGTTTCTGTGAAAAAACATGGAGTCACACACCACAGTACAAAATTGGGTATTGTCAACAGTGTCCAGAGAAAGTACAATGGCCAAAACAAATGGGTCAACCCCCTTCACTTTATTTCAATGCTGGCATGTTCTTATTTGAGCCAAGCATAGAAACTTACCACAATCTTTTGAAGACAGTTCAAGTCACTCCTCCTACACCATTTGCAGAACAAGATTTCTTAAACATGTATTTCAAGGATATTTATAAGCCAATTCCTTTGGTTTATAATCTTGTTCTTGCTATGTTGTGGCGTCACCCTGAGAATGTGGATATTCATAAAGTTAAGGTTGTTCACTATTGTGCAGCGGGATCAAAGCCTTGGAGGTATACAGGGAAGGAAGAAAATATGCAAAGGGATGATATAAAGATGTTGGTGAAGAAATGGTGGGATATTTACAATGATTCTTCGCTTGACTATAATAAGAATTTGAGTGGAAATGGTGAAACACAAACGAATGGTGTTGAAAATGAGCCATTTGTACAAGCGTTGTGTGAGGTTGGTCGTGTTCAATATGTCGCAGCACCTTCAGCAGCTTAA 1020 0.4078 MAPDLVPTATKSVTGFTKSVTIPKRAYVTFLAGNGDYAKGVIGLAKGLRKVKTAYPLVVAVLPDVPEEHREMLESQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYNKMIYLDGDIQVYENIDHLFDLPDGYFYGVMDCFCEKTWSHTPQYKIGYCQQCPEKVQWPKQMGQPPSLYFNAGMFLFEPSIETYHNLLKTVQVTPPTPFAEQDFLNMYFKDIYKPIPLVYNLVLAMLWRHPENVDIHKVKVVHYCAAGSKPWRYTGKEENMQRDDIKMLVKKWWDIYNDSSLDYNKNLSGNGETQTNGVENEPFVQALCEVGRVQYVAAPSAA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04856 339 FunFam Hexosyltransferase 23 301 - -
Trre13g04856 339 Pfam Glycosyl transferase family 8 29 271 IPR002495 GO:0016757
Trre13g04856 339 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 23 302 IPR029044 -
Trre13g04856 339 CDD GT8_Glycogenin 25 296 - -
Trre13g04856 339 PANTHER GLYCOGENIN SUBFAMILY MEMBER 21 296 - -
Trre13g04856 339 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 298 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04856 Trre-Chr13 55065382 55067842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04856 1 339 Glycosyltransferase AT1G56600 72.647 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04856 K18819 - gmx:100809287 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04856 13 55065382 55067842 Trre13g04856 13 55065382 55067842 ECH
Trre13g04856 13 55065382 55067842 Trre1g04282 1 48474851 48476287 ECH