Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04986 ATGGCACCAGACATCACCACCACAATCCTCAACACCACCGTGGAGAAACCCAAAATTGACGGTGGTAAAGGCCGTGCCTTTGTGACTTTCCTAGCTGGAAACGCTGATTATATAAAAGGTGTTGTTGGTTTAGCCAAAGGGTTAAGAAAAACCAAAACCATGTACCCTTTGGTTGTTGCAATTTTACCTGATGTTCCTCAAGAACATCGTAAGATCCTTGTTTCACAAGGTTGCATTGTTAAGGAAATTGCTCCTGTTTATCCTCCACCTAACCAAACCCAATTTGCTATGGCTTATTATGTCATCAATTACTCCAAACTACGTATTTTTGAGTTTGAGGAGTATAGCAAGATGATTTACCTAGATGGTGATATTCAAGTTTTTGAAAACATTGACCATCTATTTGATCTACCTGATGACTACTTCTATGCTGTGATGGATTGTTTCTGTGAGAAAACTTGGAGTCACACCCCTCAGTATAAAATTGGATACTGCCAACAGTGTCCTGATAAGGTTCAATGGCCCACTGATTTTGGGCCCAAACCTCCTCTCTATTTCAATGCTGGAATGTTCGTTTTTCAGCCTAATGTTGCCACATATCGTGATCTCCTTGAAAAAGTCAAAATTGTCAAACCAACCCCCTTTGCTGAACAGGACTTTTTGAACATGTATTTTAAGGATAAATACAAGCCTATACCTAATGTATACAATCTTGTCTTGGCTATGCTATGGCGTCACCCTGAGAATGTTGAGCTAGAGAAAGTTAAAGTTGTTCACTATTGTGCTGCGGGGTCTAAACCATGGAGGTACACAGGAGAGGAACAGAACATGGACAGAGAAGACATAAAAATGTTGGTGAAGAAATGGAAAGAGATATATGAAGATGAGACATTAGATTACAATAATAATGTTAGAGTGGAACGTTTCACAGCTGCACTATTAGAGGCTGGTGGGATTAAGTCAGTGCTTTCACCAAATGCTGCTTAA 987 0.3982 MAPDITTTILNTTVEKPKIDGGKGRAFVTFLAGNADYIKGVVGLAKGLRKTKTMYPLVVAILPDVPQEHRKILVSQGCIVKEIAPVYPPPNQTQFAMAYYVINYSKLRIFEFEEYSKMIYLDGDIQVFENIDHLFDLPDDYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVQWPTDFGPKPPLYFNAGMFVFQPNVATYRDLLEKVKIVKPTPFAEQDFLNMYFKDKYKPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGEEQNMDREDIKMLVKKWKEIYEDETLDYNNNVRVERFTAALLEAGGIKSVLSPNAA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04986 328 Pfam Glycosyl transferase family 8 29 271 IPR002495 GO:0016757
Trre13g04986 328 FunFam Hexosyltransferase 23 301 - -
Trre13g04986 328 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 24 303 IPR029044 -
Trre13g04986 328 CDD GT8_Glycogenin 25 295 - -
Trre13g04986 328 PANTHER GLYCOGENIN SUBFAMILY MEMBER 18 295 - -
Trre13g04986 328 SUPERFAMILY Nucleotide-diphospho-sugar transferases 28 297 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04986 Trre-Chr13 55998705 56001064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04986 1 328 Glycosyltransferase AT1G56600 73.373 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04986 K18819 - gmx:100800249 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04986 13 55998705 56001064 Trre13g04986 13 55998705 56001064 ECH
Trre13g04986 13 55998705 56001064 Trre1g04282 1 48474851 48476287 PCT